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Detailed information on CNT30223861

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697376	Hordeum vulgare	Oryza sativa	21.3	9.23	91.74	121	forward
CNT30676912	Hordeum vulgare	Setaria viridis	19.89	22.78	90.27	113	forward
CNT30314796	Hordeum vulgare	Corylus avellana	21.13	17.47	84.17	120	forward
CNT30518741	Hordeum vulgare	Juglans regia	21.13	24.19	85	120	forward
CNT30273043	Hordeum vulgare	Chenopodium quinoa	20.77	4.73	85.59	118	forward
CNT30381342	Hordeum vulgare	Manihot esculenta	21.83	15.35	81.45	124	forward
CNT30297329	Hordeum vulgare	Triticum aestivum	22.54	54.94	98.44	128	forward
CNT30541559	Hordeum vulgare	Brassica napus	19.19	21.58	83.49	109	forward
CNT30237332	Hordeum vulgare	Brassica oleracea	18.31	43.33	82.69	104	forward
CNT30258087	Hordeum vulgare	Avena sativa	22.54	27.35	97.66	128	forward
CNT306434	Hordeum vulgare	Zea mays	18.31	41.27	88.46	104	forward
CNT30610790	Hordeum vulgare	Gossypium raimondii	21.83	40.52	83.87	124	forward
CNT30345068	Hordeum vulgare	Eragrostis tef	22.54	14.32	89.84	128	forward
CNT30117905	Hordeum vulgare	Oryza nivara	21.3	10.48	91.74	121	forward
CNT30557055	Hordeum vulgare	Panicum hallii	20.07	15.26	84.21	114	forward

Expression of CNT30223861

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLSVHLFHQSWSRPVTTTTHWLAKVPSSCSRRY*

>peptide 2 (30 aa)
WFQQTDGSICSKKNYRVPNGRLRLFIYLLT*

>peptide 3 (62 aa)
MFSLAAAASPSLVYLPSCAREGDPSLEELEGVAGYFLRGGPVLALGTRGHHAWLQEDALKHDV

>peptide 4 (40 aa)
VPANRWINMLQEKLPCSKRALEIVHILTYLGWQTKATTTL*

Sequence

>CNT30223861
TGGTTCCAGCAAACAGATGGATCAATATGCTCCAAGAAAAATTACCGTGTTCCAAACGGGCGCTTGAGATTGTTCATATACTTACTTACTTAGGGTGGCA
AACAAAGGCAACAACAACGCTCTAGAGAAGAAAAAAAACATGCGAATACAGCAGTAAAACCATTCCAAAGTTTTTTTACTTAGGGTGGTAAAACACAGTA
TATGCTCTCCGTCCATCTCTTCCATCAGAGCTGGTCTCGACCTGTAACAACGACGACACACTGGCTGGCTAAGGTGCCCTCAAGCTGCTCAAGGCGCTAC
TAGCACTCTCCCTCCGTAGGTAGATTATGTAGATAGGACAGCTCGCCGACGGATCAGTAGCTGTAGTTCTTGACGAACATGTTCTCTTTGGCAGCTGCGG
CCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGGGAGGGGGATCCTTCTCTGGAGGAGCTTGAGGGTGTAGCTGGCTACTTCCTCAGGGGTGGCCC
TGTCCTTGCACTCGGCACCAGGGGTCACCATGCTTGGCTTCAGGAGGATGCCCTCAAACATGACGTTG