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Detailed information on CNT3054019


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30148178Amborella trichopodaBrachypodium distachyon5.0127.3188.1459forward

Expression of CNT3054019

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MARRHAESSSAANSRRNLESTLARSNYWQGFLLLRSSKREDVPHRLHIKALTTMARL*

>peptide 2 (43 aa)
MFRIGYTSKHSLLWLGFDVSHQSTRSALTRRVHTRNRKAPAPF*

>peptide 3 (35 aa)
MSVVFMVYQYVQKTMDTHVHLIMNAHLILDPPLYH*

>peptide 4 (33 aa)
MLILYWIHRSTTELLRNNGIIYVLTSRVSLSMY*

Sequence

>CNT3054019
TTTAGATAATTTAAATAAACCCCATGGTGGATAAGTTAGCTTGAATTATCAAAATTTGGCATTTCGTCTTGATAATCTATGCTACATAAATACGTATGTC
AGCATTTGACACGGATATGAGTGTCAGAAATACCAATCTCAAAATTGACCTTTCAAACATGACATGTCCGTACACCATTTAAAGAAGGGGGAAGATGAGA
TTTCAGATGACATTAGTACTCTCAAATGAAATTTCAAGACCAAAGGTTAAAAAAAATCTAGGTTTCTAAAGTGTCAAAAATGAGTGTTGTGTTCATGGTG
TATCAATACGTGCAAAAAACTATGGATACACATGTCCATCTGATAATGAATGCTCATCTTATATTGGATCCACCGCTCTACCACTGAGCTACTGAGGAAC
AACGGTATCATATATGTATTAACGAGCCGAGTCTCTTTATCTATGTATTAACCACTTTTTTCAGGACGAGAGAATTGTAACGGGAGAGAGCGAGGAGAGT
CTCTCTCTTTATAGGCGTATCAACTTGACTTCCATCATGCTCCAAGGCAGAAGAATGGCAAAGAAGAGGTGGGGAGAGACATTTGATCTACTGACTCGAG
TCTATCAACCCTAAGTGGCTATCCCGTCTCTGACAGATGGCCATTTTAACTAACTAATCAGAAATACAAGACTAGCTGAAAGAGGAAGGAAAGCCACCCG
CTGCACCAAACCATCAAACCATTCTCAATAACGTAACTTGTGGAGCCAAAGCCAACGGAGAACGAGTGGAGTTTAAACGAGTTTCGTTCTACGCTATTAA
GCTCGTTTCTAGTAGCGGTCAACGAAAACAAGTTAGGCAACCTATGGCTCGCCGTCATGCCGAGTCTTCCTCCGCCGCCAACTCTCGTCGTAACCTTGAA
AGCACTCTAGCAAGGTCAAACTATTGGCAGGGCTTTTTGCTCTTGCGAAGCTCCAAGCGAGAAGATGTTCCGCATAGGCTACACATCAAAGCACTCACTA
CTATGGCTAGGCTTTGATGTTTCGCATCAAAGCACTCGCTCCGCTTTGACTAGACGGGTTCACACTAGGAATCGAAAGGCGCCGGCTCCCTTCTAATTGA
CAGCACAACTACGTGTTGGCACTCAATTAGTAGCGCTGGCATGTCACTCGGCTCCTGTTGTCAATGGAGGAACATAA