Detailed information on CNT30522440


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678071Setaria italicaSetaria viridis26.4126.3895.16310reverse complement

Expression of CNT30522440

Peptides detected in this lncRNA

>peptide 1 (66 aa)
PKKKTPASASYSIVSPKTTERHTGTATAIVAVVAITRARTSSESLRFSVDAASGGPARDLRLAASG*

>peptide 2 (44 aa)
QKRKPPPARATRSSPRKRPNGTRAQQRLSWPWLQSLARAPAPRA*

>peptide 3 (30 aa)
MLIRRTKHELIIKLIAEPCANSRDESIKPN*

>peptide 4 (87 aa)
MEPNRPKRKITRRSPSWRRQLGWPLAAPFATSSPGPLPATNPLFLSPPTLPGFTSSLSVFLGGALRHVFAGSFAGDEPTRVMGYFCG*

>peptide 5 (72 aa)
AKKENPRQRELLDRLPENDRTAHGHSNGYRGRGCNHSRAHQLREPEIFSGRRQRRPGARSPLGCFRLMACGC*

Sequence

>CNT30522440
GCCAAAAAAGAAAACCCCCGCCAGCGCGAGCTACTCGATCGTCTCCCCGAAAACGACCGAACGGCACACGGGCACAGCAACGGCTATCGTGGCCGTGGTT
GCAATCACTCGCGCGCGCACCAGCTCCGAGAGCCTGAGATTTTCAGTGGACGCCGCCAGCGGCGGCCCGGCGCGAGATCTCCGCTTGGCTGCTTCAGGCT
GATGGCTTGCGGTTGTTAGCTGCCGCGGTCCCGAGACATTTGTCGTTGGGCACCGGTACTGCCGCACTGGTCAGTACTCATAACTATGCAAAGAGCCAAA
GAGGATCACTTGGGTATAGTTGTTAACAGATATAGGGGTGTTTGGATACGAGGTGCTAAACTTTAACAGTGTCACATCGGATGTTCGGATGCTAATTAGG
AGAACTAAACATGAGCTAATTATAAAACTAATTGCAGAACCCTGTGCTAATTCGCGTGACGAATCTATTAAGCCTAATTAATCCATCATTAGCAAATGGT
TACTGTAGCACCACATTGTCAAATCATGGACTAATTAGGCTTAATAGATTCGTCTCACGAATTACACTCCATCTGTGCAATTAGTTTTGTAATTAGTCTA
TGTTTAATACTCCTAATTAGCATCCAAACATTCGATGTGACGGGTGTTAAACTTTAACACCATGGAGCCAAACAGGCCCAAAAGAAAAATCACTAGGCGT
TCACCTTCCTGGCGGCGGCAACTTGGCTGGCCGCTGGCGGCACCCTTTGCCACGTCTTCGCCGGGTCCTTTGCCGGCGACGAACCCACTATTTCTCTCTC
CCCCCACCCTCCCCGGGTTCACCTCTTCTCTCTCGGTCTTTCTTGGCGGCGCCCTCCGCCACGTCTTCGCCGGGTCCTTCGCCGGCGACGAACCCACCAG
GGTAATGGGATATTTCTGCGGGTAGCTAGACCTATACAGGAGCAAGTACTCAAAATTTGCACTTAAATCTTAAGAAAATAGTATTGCACTGAAGATACCT
TTGTGCTATATATTTAGCAGGTATCAATCATGGAATCGTTATCATTTTGCTTAAAAGATTCATTATTTCAAGCCAATGCCTCTGCTTTTCTTTTCAAATT
ATTCGTTCTTTAATACTTTGGCCTCCATTTTTTCTTGCTGATGTACTCACAATGGACCAATGCTGCTTTCAACA