« Back to Setaria viridis search


Detailed information on CNT30678071


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003932, E-value = 2e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694625Setaria viridisOryza sativa8.8527.5187.5104reverse complement
CNT30522440Setaria viridisSetaria italica26.3826.4195.16310reverse complement
CNT30307554Setaria viridisTriticum aestivum17.4537.3483.41205forward
CNT30554388Setaria viridisOryza glaberrima23.3276.9778.83274reverse complement
CNT30466486Setaria viridisSaccharum spontaneum1652.8181.38188forward
CNT301414Setaria viridisZea mays8.6822.7288.24102forward
CNT30103881Setaria viridisOryza rufipogon11.4928.4884.44135reverse complement

Expression of CNT30678071

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLIRSIKYRLITKLITQMECNSRDESIKVN*

>peptide 2 (33 aa)
MESDLMIGRKMPPALAAVLGMAGAMQASPRVSP*

>peptide 3 (54 aa)
QNFFAGTIQGNVLAPILSQLQQSENDEKLFISACRTLKMAVLHFFNSNGWSFSL*

>peptide 4 (75 aa)
MRSPRPEMTMSQMISLVKAAKAAAKGSVFVATTVVSPRKATAPTGSGPSTSPAMVERKMESICHALGLTSAGRGAR

Sequence

>CNT30678071
CCCAAAACTTTTTTGCAGGTACTATTCAGGGGAACGTATTGGCTCCGATCTTGAGCCAATTGCAGCAAAGTGAGAATGATGAGAAGCTCTTCATTTCAGC
ATGCCGAACTTTAAAGATGGCAGTTTTACATTTCTTTAATTCAAATGGATGGTCTTTTAGTTTATGAATTGGTTTTTGAGTCCTATTTGTGTGTAATAGT
AGTGGACTGATCCTCTTCTTTGAGGAGGTTGAAGCCGGAACATTATCCATTATCTAAAAAAAGATGTGTGAGAACTACAGTCCAAGTAGTATATTGGATC
TACTAAGGGCCTGTTTGGCTCCTGGGTGTTAAAGTTTAACACCCGTCACATCGGATGTTTGGATGCTAATTAGGAGTATTAAATATAGATTAATTACAAA
ACTAATTACACAAATGGAGTGTAATTCGCGAGACGAATCTATTAAGGTTAATTAGTCCATGATTTGACAATGTGGTGCTACACTAACCATTTGCTAATGA
TGGATTAATTAGGCTTAATAGATTCATCTCGCGAATTAGCACAGGGTTCTGCAATTAGTTTTATAATTAGCTCATATTTAGTTCTCCTAATTAGCATCCG
ATCATCCGATGTGACATTTAGTATCTCGTATCCAAATACCCCCTAATCTAGGAACAAGTAGCAATTAGCAACTTCATCAATTGATCCACCCATGCGAATC
TGACGAACTGCACTACTTAATTACCTGGAATTGCGTCATCACAAGATATGATCCGAGCTTCCGTGAAGATGGATGATTGGGCTTGCTGCCAGCCGAGATG
GAGAGTGACTTGATGATCGGCAGGAAAATGCCCCCTGCCCTCGCCGCGGTGCTGGGCATGGCCGGCGCTATGCAGGCCTCGCCGAGGGTGAGCCCGTAGG
ACAGCCCCAGCGTGCTGCTCCCGAGCCACTTGACGAAGTAGGTGGCGATGCGGTCGCCGAGGCCCGAGATGACGATGAGCCAGATGATCTCGTTGGTAAA
GGCGGCGAAGGCGGCGGCGAAGGGGAGCGTTTTCGTGGCAACGACGGTCGTGAGCCCGAGGAAGGCCACGGCGCCGACGGGGAGCGGGCCCAGCACGAGC
CCCGCGATGGTGGAGAGGAAGATGGAGAGCATCTGCCACGCGTTGGGGCTCACCTCGGCGGGCCGCGGCGCGAGG