CANTATAdb - search

Detailed information on CNT30522017

BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677497	Setaria italica	Setaria viridis	51.9	66.6	99.69	327	forward
CNT30435325	Setaria italica	Aegilops tauschii	46.03	48.74	85.52	290	forward

Expression of CNT30522017

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MGPLPVTMACTKNPNMENMARISGNTHPSAPSMAHREWITSSSRLRAKVSGSAESPAVSHP*

Sequence

>CNT30522017
GCGTGCACGAGTGTGTCCCATGAGATAACTAACTGAAGATCGATCTGACAAGTGACGGTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAG
CTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACGTCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCA
CGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGAGCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCA
TGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGTCCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAAC
ATGGCGAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATCACCTCCAGCTCGCGGTTGCGCGCGAAGGTCTCCGGGT
CGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGGCG
GTCAGGGCCGTACCTGCACGTACGTAGCTG