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Detailed information on CNT30520929


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 4e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440628Setaria italicaAegilops tauschii47.7649.3290.88362forward

Expression of CNT30520929

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGFVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (68 aa)
KPQSKCKSVEQTFREHETNCIKITRRLPTRLKMPKRAHIGIKAFKFCPSRYNKRVPKQQTHGTPPADL*

Sequence

>CNT30520929
TGAAACCACAATCCAAATGCAAATCAGTGGAGCAAACATTTAGAGAACACGAAACAAATTGCATAAAGATAACTAGACGACTCCCAACTCGTTTAAAGAT
GCCCAAAAGAGCACACATAGGTATTAAAGCATTCAAGTTTTGCCCAAGCAGATATAATAAGAGGGTACCTAAACAACAAACACATGGCACACCGCCAGCG
GACCTTTAAAAGTTCAACGACAACAGCAATGACCGGGGACAAAACTAATATGTGATAGTGAAAGTTATCTAGGTATCGCAAAAGCAGACACAGGATTAAC
CACCAGGCGCATCATTTCTTCTTGGCGGCAGCCTTGGTAACCTTGGCGCATCATTTCTTCTTGGCGGCAGCCTTGGTAACCTTGGCGCCGGTCGGGTCCT
TCTTCTCCACGCTCTTGATGACTCCCACAGCAACTGTCTGTCTCATGTCACGGACAGCGAAGCGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCAC
CATGGGCTTCGTGGGAATCATCTTCACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGCCTGTCGATCTTG
GTAATGAGCTCAGCAAACTTGACAGCTATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGA
CCTGGGAGGTGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCAC