« Back to Aegilops tauschii search


Detailed information on CNT30440628


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 1e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672978Aegilops tauschiiSetaria viridis49.3246.5990.88362forward
CNT30520929Aegilops tauschiiSetaria italica49.3247.7690.88362forward
CNT30637620Aegilops tauschiiCapsicum annuum32.1512.2986.44236forward
CNT30224723Aegilops tauschiiHordeum vulgare66.6270.2696.11489forward
CNT30246955Aegilops tauschiiAvena sativa49.3220.5193.09362forward
CNT30665783Aegilops tauschiiTriticum dicoccoides45.7836.8897.62336forward
CNT30132437Aegilops tauschiiLolium perenne48.2329.4588.98354forward
CNT3011290Aegilops tauschiiZea mays48.7726.0487.71358forward
CNT30684514Aegilops tauschiiTriticum urartu49.3246.7196.69362forward
CNT30721809Aegilops tauschiiTriticum spelta56.9527.796.65418forward
CNT30350895Aegilops tauschiiEragrostis tef49.3232.0689.5362forward
CNT30423787Aegilops tauschiiPapaver somniferum49.3219.4385.36362forward
CNT30644842Aegilops tauschiiCannabis sativa32.5659.1686.61239forward
CNT30101006Aegilops tauschiiOryza rufipogon49.3252.0189.23362forward
CNT30594462Aegilops tauschiiEragrostis curvula49.3231.190.33362forward

Expression of CNT30440628

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGLVGIILTIPASPFFRNLGSASSSLPDRLSILVTSSANLTAMWEVWQSSTGA*

>peptide 2 (38 aa)
MAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGG*

Sequence

>CNT30440628
AGGAGTTTAGCCGACGCAGGAATAGAAATACAGTAATTAAACGACAGACAGATCATTGCTCGCTCGGGATAAGAGTCTGAAGCAACAAAAGCAATGACCG
TGAACAAAAACATTCTGCTAGATAGCACGCCTATTTCTTCTTGATGGCAGCCTTGGTAACCTTGGCGCCGGTGGGGTCCTTCTTCTCCACGCCCTTGATG
ACACCAACAGCAACCGTTTGTCTCATGTCACGCACAGCGAAGCGGCCAAGAGGAGGGTAGGTGGCGAAGGTCTCCACAACCATGGGCTTGGTGGGAATCA
TCTTGACGATACCAGCGTCACCGTTCTTCAGGAACTTGGGCAGCGCCTCCAGCTCCTTACCAGATCGCCTGTCGATCTTGGTCACCAGCTCAGCAAACTT
GACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGGGAAGACGCAG
GGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCTGGTCAAGAGCCTCAAGAAGGGTAGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATG
TTGTCACCCTCAAACCCAGAGATGGGAACGAAGGGAACCTTGTCAGGGTTGTAGCCGACCTTCTTCAGGTACGAAGAGACTTCCTTGACAATTTCCTCAT
AACGGGCCTTTGAGTACTTGGGAGTGGTGGCGTC