« Back to Solanum lycopersicum search


Detailed information on CNT30510877


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30172221Solanum lycopersicumTrifolium pratense17.0823.488.7162reverse complement

Expression of CNT30510877

Peptides detected in this lncRNA

>peptide 1 (45 aa)
KVVVYWSNPLGVTELDKTPTHYPSTAQSGSCSLLCEASLMRSAPL*

Sequence

>CNT30510877
AAGGTGGTTGTTTATTGGAGCAACCCATTAGGCGTTACTGAACTTGATAAGACACCGACCCATTATCCTTCCACTGCACAGAGCGGGAGCTGTTCACTGC
TCTGTGAAGCCAGCCTCATGCGGTCCGCCCCGCTTTAGGAATCAAGAAGCCCATATTTTCATTTGGGCCTCGTGATCCTACTCTGTGCTTGGACAGGGCA
GGCCAGAACTAAGCCCACCAAGCCCAACCTTCTGGTAAAGCCCAATATTCAACCACTTTGATGCCAGAACTAAGCCCACCAAGCCCAACCTTCTGGTAAA
GCCCAATATTCAACCACTTTGATGTCTCCACTTGGATTACAAGCCCACGTTACTAAGCTCAAC