Detailed information on CNT30172221


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515285Trifolium pratenseJuglans regia54.7219.1582.07145forward
CNT30272829Trifolium pratenseChenopodium quinoa51.744.6382.48137forward
CNT30507382Trifolium pratenseNicotiana attenuata22.6419.6788.3360forward
CNT3046251Trifolium pratensePrunus dulcis57.7450.8381.7153forward
CNT30158859Trifolium pratensePistacia vera27.9225.7889.1974reverse complement
CNT3096560Trifolium pratenseSolanum tuberosum23.7720.7990.4863forward
CNT3084328Trifolium pratenseVigna radiata56.9849.6785.43151forward
CNT30510877Trifolium pratenseSolanum lycopersicum23.417.0888.7162reverse complement
CNT3030049Trifolium pratenseTheobroma cacao28.324.438875forward
CNT30121042Trifolium pratenseCitrus clementina26.7923.5990.1471reverse complement

Expression of CNT30172221

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MALVHWAGLSCTLFWPARSKSRVGPWDLGEGPVLLVSRMEGTA*

>peptide 2 (42 aa)
NNVMGHGFGSLGWVELYSILACPLQVESWAMGFGRRPGSPGL*

Sequence

>CNT30172221
GCAATAATGTGATGGGACATGGCTTTGGTTCATTGGGCTGGGTTGAGTTGTACTCTATTCTGGCCTGCCCGCTCCAAGTCGAGAGTTGGGCCATGGGATT
TGGGCGAAGGCCCGGTTCTCCTGGTCTCTAGAATGGAGGGAACCGCATGAGGCTGGTTTCACAGAGCAGTGAACACCTCCTGCTCTTGACAGTGGAGGGA
TAACAGGCTGTTGTACTCTCAACCCACATAGCCTGATGGGCTTAGCACATTGGACCATCACTTTT