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Detailed information on CNT30510829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193453Solanum lycopersicumSecale cereale19.0653.2887.69130forward
CNT30606803Solanum lycopersicumGossypium raimondii33.2880.2188.11227forward
CNT30627898Solanum lycopersicumDaucus carota32.77.2493.27223forward

Expression of CNT30510829

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VVSCPNHSCSPKPAKKRANLEQSFRVVDS*

>peptide 2 (31 aa)
MNKNNNKKESNRTISVIGKCLFFSESCRNYS*

>peptide 3 (32 aa)
MLPISTSRLGLTHNTEPLGVAFCLILESIVAT*

Sequence

>CNT30510829
TGGTTGTTTCTTGTCCCAACCATTCTTGTAGTCCCAAGCCCGCTAAGAAAAGGGCTAACTTAGAACAAAGTTTTCGTGTTGTTGATTCCTAGGTGTAGAG
CTTCTTCCCCTATGCTGCCTATTAGCACTAGTAGATTAGGATTGACCCATAATACTGAACCTCTAGGCGTAGCCTTTTGCTTAATACTAGAATCTATTGT
TGCAACATAGCATCTGAGGTTGCATTAATCGAGTATACACGACAGAAGGAATTGTTCAATTTCCAAACTTCACCTTCAAAAAGCGTAGAGTTTTTTTCTC
GAATCATGTGTTTTTAGCCTTGTAAGACAGAGAGAAATGAATAAAAATAATAATAAAAAAGAATCAAATCGCACCATCTCTGTAATAGGTAAATGCCTCT
TTTTCTCCGAAAGTTGTCGGAATTACTCGTAATAAGATATCGGCTACAATTGAAAAGGTCTTATCAATAAAATTTCCATTTATCCGTGATCTAGGCATAG
GTAGCAATCCATTCGAGAATTATTTTCATTACCTCTCGTGGGAAAAAGATCCCACAAAGAAAAGAATTGTATAGTACGAAATAACATAAAAACTTCTTTT
TTTTAATAAAAAAAAACAAAACATATGAATCCTCTATTCCAGTAGTTCCTTTTTGACAGGAATCGAGAAGAAATATCAAATA