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Detailed information on CNT30627898


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXV8|YCF3_HELAN, E-value = 5e-78

BLAST vs NONCODE:
NONCQUT003887, E-value = 7e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529029Daucus carotaEucalyptus grandis20.4730.7687.46630forward
CNT30618958Daucus carotaSesamum indicum33.3718.4389.091027forward
CNT3020650Daucus carotaCitrullus lanatus27.6848.9789.55852forward
CNT30730408Daucus carotaCorchorus capsularis14.3993.6695.03443forward
CNT30632297Daucus carotaVigna unguiculata24.6942.9984.21760forward
CNT30201085Daucus carotaPisum sativum18.1927.7290.36560forward
CNT3047566Daucus carotaPrunus dulcis28.6545.7286.96882forward
CNT3094383Daucus carotaSolanum tuberosum6.9910088.37215reverse complement
CNT30194121Daucus carotaSecale cereale14.2949.1691.36440forward
CNT30588877Daucus carotaMusa acuminata7.0279.1285.65216reverse complement
CNT30510829Daucus carotaSolanum lycopersicum7.3733.2893.39227forward
CNT30555988Daucus carotaOryza glaberrima10.1446.4379.49312forward
CNT30171250Daucus carotaTrifolium pratense3.0525.7593.6294forward
CNT30598583Daucus carotaFraxinus excelsior9.1328.2189.68281forward
CNT30445979Daucus carotaSaccharum spontaneum11.8392.6291.48364forward
CNT3017916Daucus carotaZea mays14.1721.1491.97436forward
CNT30606803Daucus carotaGossypium raimondii7.581.6389.61231forward
CNT30232528Daucus carotaAnanas comosus14.9823.2993.06461forward
CNT30217417Daucus carotaKalanchoe fedtschenkoi12.4481.8491.64383forward
CNT30655373Daucus carotaRosa chinensis28.420.8788.9874forward
CNT30351181Daucus carotaEragrostis tef5.0430.6985.81155forward
CNT30362312Daucus carotaSorghum bicolor2.9929.4994.5792reverse complement
CNT30595954Daucus carotaOryza meridionalis13.7132.1489.34422forward
CNT30360010Daucus carotaLactuca sativa7.6321.8894.47235forward
CNT30430934Daucus carotaPapaver somniferum33.1115.687.241019forward
CNT3022800Daucus carotaPopulus trichocarpa11.0510092.94340forward
CNT30332506Daucus carotaDioscorea rotundata14.8550.1687.09457forward
CNT30149145Daucus carotaBrachypodium distachyon14.2924.591.36440forward
CNT30103542Daucus carotaOryza rufipogon11.650.3591.6357forward
CNT30604206Daucus carotaOryza punctata6.2448.2489.58192forward
CNT30114189Daucus carotaFicus carica27.6521.688.72851forward

Expression of CNT30627898

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRFNIITRSKRYSLFPILSGLIEPSLRNFRISLSNGL*

>peptide 2 (41 aa)
MVIQVSKIQTRWMFVVPTILVSSDPDKDRDNFEQSFRVVDS*

>peptide 3 (33 aa)
MELLHVLHRTYLIYSKSPEHPLAITNRYPEISI*

>peptide 4 (53 aa)
MESSSFRTTHTKRPANSQKMSESLRDIYIMSLFLFYFSISHLFIFVSYSLELL*

Sequence

>CNT30627898
TCATGGAGTCCTCCTCTTTCCGGACAACACATACAAAGAGACCTGCCAACAGTCAAAAAATGAGTGAATCTTTAAGAGATATTTATATAATGAGTTTGTT
TCTCTTCTATTTTTCTATCTCCCATTTATTTATTTTCGTCAGTTATTCACTAGAGCTATTATGATCTGTAAGTCGATCCGAGGCAAGTGTTCGGATCTAT
TATGACATAGACATGAGGCGCTCAACGGACCTTTTTAATATTATAAAACTCTTTCTGGGCTTTGGATTAATGCAAAAACATCTTTTTGTGTAACCTACGA
TATATTCATATCTCAATTATTAATTATAAGTTCTTAGATGGAGCTGCTTCATGTTTTACATAGAACATATTTAATCTATTCCAAATCACCCGAGCATCCA
TTAGCCATTACTAATAGATATCCCGAGATATCTATTTAGTGCTTCGAGGGTCTCTTTTTTTAGTTTTAAAAGAAAGACAAGAGCTAAGTCTATTTTGTAC
TCTATCTGTGTATCCTTTATCCCTACGAAATACCCAGACGAAATAGAACGCTTAGAAGGGATATAATGAAATTATTAAATTGGTTCTTGCCTGAGGAATG
GTCCTTTTTATTATTTGACTGATGGGGCCAACAAACAATTAATTATAACAAAAAAATAAATATAAATCCTAAATAAGAAATAAAAAGAACTAAGGCGTCT
TCTTTTATTCGAAACGCCTAGTGATCTTCAACCAATTATGCGCTTCAATATAATTACCAGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAGCGGCTTG
ATCGAACCAAGCCTCCGCAATTTCAGAATCTCCCTGTCGAATGGCTTATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAG
AACGGATTTCGTTCTAGCGCTCGGAAATAATATTCCAGAGCTTTCGTATGTTCTCCGTTACTTGTGTGGATAAGTCCTATGTTATAGAGTATATAACTTC
GATCATAGGGATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCGACATCCGTTACGGTCGTCA
TTCAATTCAAAGAATCTCCGTTCCAGAACCGTACATGAGATTTTCATCTCATACGGCTCCTCTTTTATGTGCATAATGAAAATAAAACAGCGAATAAAAA
AAGATTAAAATATTATCATTATGAACTGAGCAGGGCTAGTGTTTTTACAAGAAATCTCTAGCCAACCTTACTGCAAGAGATCTTTTCTTAAGATCAAACC
TGTTGATACTTTATAGAAATGATAACTCCAACAATTTCTTTGTTCTAAACGCCTTATAATTTCCAGAAATTAGTCACTTCAACAGCCTTCGATGGTTATA
CAGGTATCCAAAATACAAACGAGATGGATGTTTGTTGTCCCGACCATTCTTGTTAGTTCCGATCCTGATAAGGATCGGGATAATTTCGAACAAAGTTTTC
GTGTTGTTGATTCCTAGGTGTAGTGCTTCTTCCCCTATGTGGCCTATTGGTACTGGTGGAGTAGGATTGACCTGTAAATACAGAACCTAACAGAACCTAT
AGGTGTAGCCTTTCGCTCAATACTAGAGTCGACAATTAAACCATAGCATCTGAGGTTACATTAACGGAGGATACACGACAGAAGGAATTGTTCTATTTCC
AAACTTTACCTTCAACAAGCGTAGATTTTTTTTTTCAAAATTTTTATTTCTATTATATATCTTTCTCGTAATATTGAGAGCAATAAAAAAAAGAATCAAA
TCGCACCATCTCTGTAATAGGTAAATGCCTCTTTTTCTCCTGAAGTTGTCGGAATTATTCGTAATAAGATATTGGCTATAATTGAAAAGGTCTTATCAAT
AAAATTTCCATTTATCCGCGATCTAGGCATAGGTAGCAATCCATTCTATAATTATTCTCATTACCTCTAGTGGTAAACCGATACCACAAAGAAAAGAATT
GTACAGTACGAAATAACATAAAAAAAAATTCATTAAGAAAAAAGGATATGGGACCTGTATTTAGATTTATTCAAATTGTTCTTTTTTGACAGGAATAAAA
AAAAAAAAGAAATAAATATTGGAGTACGCTTCGATTTCATCCTAATGTAAATGGAGTAGTATACCAACAAAAGAAAGTATTCAATTTCATTTAAGTTATA
GATTATAATAACGAATAATTTTTTATTGAATTCTCATCCAATCCAAAGAAGAAAAAAAAAAAAAGGATCCAATAACCATTCTACGATGAAAAAACCCGCC
TGTTTTATTTTGTATGCATAGAGGAGGTATACACTATAGAATCCACTTATATATAATTTCTATGAATATTTGTAATAGATCTGCAGGATAGGATTTGTTG
TTGAGAGAACTAGAAAACTGGACTGGAAAGAAATTTCTTAATTCTTAAGATATGGAATAATAGTTTAAATAGAATCGTGATCTGAAGAGATCCATTAACC
AAAGTGCAAAAATAGACCTATCAATCAGCGGATTCGTTAGAATTTAGTGATTGCCTCCGGTACCGTTATAAAATAACAGAAAAAGAGGCGAAGGCTGGTT
TGGTTTTGCAAAGAATTCTTTATAACAGTTTTCTTATTTTCTATTTATCCGTATAACCTCAAAACAAAGAAATTTATTTGACTTTGATGAAAATTTATAT
ATTTTTCTAATTAGAATTAGAATTGATTGGTCGTTCCTATCCAATAATCTACGAGTACCGGCTCGCTATTCACTCGGTTTTTGGGTCATAATCATTATGT
AGGAGAGATGGCCGAGTGGTTGAAGGCGTAGCATTGGAACTGCTATGTAGGCTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTACCTTTATCTA
ATTCACTGATCTTACTAACCAAAAGAGTAAAATAGCACTATATAAAATTATATTCCAACACAACAGTTAGACCTTTCTTTGATATATTTTTTTTTATTCC
TAATTGCTGTGGCATGGAAAATACTGAAAGGAAAAGAGTAGACAAGGAAGGAAAATCTACCTCTCATTGTAGGTTTAG