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Detailed information on CNT30503796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272386Nicotiana attenuataChenopodium quinoa52.2126.8286.44177forward
CNT30629300Nicotiana attenuataVigna unguiculata52.2147.7184.18177forward

Expression of CNT30503796

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MSSSVPTVVTRELTSQVAWGLTGEWAQVLDTIRTIPWAARRDWLRLGHSLPHGDFSISTDLRGRW*

>peptide 2 (30 aa)
MVTFPFPLISEEDGESFTAFPAKEEEERAIV

Sequence

>CNT30503796
TAAGAAAAAGTGATAATTTTTAAGAATTTCACTTTCCGGGGACAAAGTTTGTGGCATAGGACCAGGCGTTGTTGTTAACTGGATCAGCAAGATGTCCAGC
AGTGTCCCAACCGTAGTCACCAGGGAACTCACCAGTCAAGTAGCTTGGGGACTCACCGGAGAATGGGCCCAAGTACTTGACACGATCAGGACCATACCAT
GGGCTGCCAGAAGAGACTGGCTTCGCCTTGGTCACAGTCTTCCTCATGGTGACTTTTCCATTTCCACTGATCTCAGAGGAAGATGGTGAGAGTTTCACCG
CCTTTCCGGCAAAAGAAGAGGAAGAGAGAGCCATTGTTG