Detailed information on CNT30503705


BLAST search results

BLAST vs Swiss-Prot:
sp|P27496|CB25_TOBAC, E-value = 8e-85

BLAST vs NONCODE:
NONSTUT001352, E-value = 2e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538628Nicotiana attenuataBrassica napus40.5736.4683.33198forward

Expression of CNT30503705

Peptides detected in this lncRNA

>peptide 1 (50 aa)
QSYRQGRVGQQPHQEVHQQHDNPQQLPLTRLDKPKWPRYFVHGPSLAHDS*

>peptide 2 (51 aa)
MVTFPFPLISEEDGESFTAFPAKEEEERAIVEAAIVVEILLKMQLLHRKSI*

>peptide 3 (31 aa)
MAKILCAWTKLGSRFLAKVSGSAESPAVSQP*

Sequence

>CNT30503705
GTCAAAGCTACCGCCAGGGTAGAGTGGGTCAACAACCTCACCAAGAGGTCCACCAGCAACACGATAACCCTCAACAGCTCCCATTAACACGACTTGACAA
GCCCAAATGGCCAAGATACTTTGTGCATGGACCAAGCTTGGCTCACGATTCTTAGCAAAAGTTTCTGGATCAGCTGAAAGTCCAGCAGTGTCCCAACCGT
AGTCACCAGGGAACTCACCAGTCAAGTAGCTTGGGGACTCACCGGAGAATGGGCCCAAGTACTTGACACGATCAGGACCATACCATGGGCTGCCAGAAGA
GACTGGCTTCGCCTTGGTCACAGTCTTCCTCATGGTGACTTTTCCATTTCCACTGATCTCAGAGGAAGATGGTGAGAGTTTCACCGCCTTTCCGGCAAAA
GAAGAGGAAGAGAGAGCCATTGTTGAAGCTGCCATTGTTGTGGAAATACTCTTGAAAATGCAGCTACTACACAGAAAGAGTATTTGAT