Detailed information on CNT30503308


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30410430Nicotiana attenuataPapaver somniferum99.9244.897.611296forward

Expression of CNT30503308

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSRRLILQQARGQSPGSSHCLGAYGFMFYFTPRWGFFSPFPHGTTSLSVTQEYLALQGGPC*

>peptide 2 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKLHPGHG*

>peptide 3 (69 aa)
MFQFARLSLACPWIQQQFERLSLACPWIQQQFERLPYSGISGSMLIFNSPKHFVDYYALPRLWVPRYPP*

>peptide 4 (37 aa)
SSSAQERSISELLRTLSRVAASRQTSWLSLHPYLLYH*

>peptide 5 (44 aa)
MGVLFTLPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 6 (46 aa)
HLRRKSARSVSYYALFQGWLLLGKPPGCLCTPTSFITERSFRGLSW*

>peptide 7 (53 aa)
MDSAAVRKVVSCLPMDSAAVRKVALFGNLRIYAYFQLPEAFRRLLRPSSSLGA*

>peptide 8 (29 aa)
MLLGSEHKLVMLSATGLSPSRVQHSGCFA*

>peptide 9 (29 aa)
MDRSPRFGSISSDNCPMKTRFRYGSGGFP*

Sequence

>CNT30503308
TCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACC
TCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTAGCCGACC
TTGACCCCTGTTATTTTGAGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGAT
GTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCT
TCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGC
CCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAG
CCCTGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTA
TCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGA
TGCTTTCGGCTACTGGACTTTCGCCATCTAGGGTGCAGCATTCGGGCTGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCA
CGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTC
TTGCCTGCCCATGGATTCAGCAGCAGTTCGAAAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTCGAAAGGTTGCCCTATTCGGGAATCTCCGG
ATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGATTACTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTG
AACCTCGCCCTTCACTTTTAAGGCTATGCCATCCTAAGGTGCTGCTAAATGGATGGATCTTATCAACGTCCATGAATGATAAATCATAGATCGAACC