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Detailed information on CNT30499501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549577Coffea canephoraIpomoea triloba14.5821.7996.1578reverse complement
CNT30506280Coffea canephoraNicotiana attenuata14.7726.7893.6779forward
CNT30605418Coffea canephoraGossypium raimondii14.3927.2192.2177forward
CNT30126894Coffea canephoraCorymbia citriodora14.5821.6194.8778forward

Expression of CNT30499501

Peptides detected in this lncRNA

>peptide 1 (62 aa)
PIHKLVLIRSFWSRVSFISSYRIVPTPSLFYSAPRRSKLFGLQKKKKGRGRRSKEILVNLQQ*

Sequence

>CNT30499501
CCCAATTCATAAACTAGTCTTAATACGCAGTTTTTGGTCTAGGGTTTCCTTTATAAGCTCCTATCGCATCGTCCCCACCCCCTCATTATTTTACTCTGCT
CCCCGCCGCAGCAAATTGTTTGGACTGCAAAAGAAGAAAAAAGGAAGGGGAAGAAGAAGTAAGGAAATCCTCGTCAATCTGCAACAATGAGAGCTAAGTG
GAAGAAGAAGCGGATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAACCCCGCAACAAATAAACGGGTCAAACTAAACGAAAT
AAAACTTTTGAGTGCAATTTCCGGGGTGTAATGCAACTCCCAGGAAGACCATTTCCGTGTTCACGGATTTTGACACAATCCCACTGGGTGGAATTCTCTG
TTTAGGTCAGGGTTATGGCCTGATTCTTGTGCCCGTTGCATATATAGGATTCATTTGAAGGTGATCAAGCAGTTCATCATACCTAGAAGGATATCAAAGT
AGACATCTATAACTGCAAACACGACCTTTGCCAGG