CANTATAdb - search

Detailed information on CNT30499384

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG87|RS272_HORVU, E-value = 1e-68

BLAST vs NONCODE:
NONSTUT000620, E-value = 4e-29

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30586129	Digitaria exilis	Musa acuminata	51.45	59.96	91.54	319	forward
CNT30582668	Digitaria exilis	Echinochloa crusgalli	82.58	88.28	97.46	512	forward

Expression of CNT30499384

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSRCWSGGMPSLSWILAFTLSMVSEDSTSNVMVFPVRVFTKICI

>peptide 2 (29 aa)
MKVPAPQSALGHSLRRRSTRWRVDSFWML*

Sequence

>CNT30499384
CCAGATGTAAGACAGGCCATTCTAATTCTTATCAGTAGCCATCATATTGAATACAATGAAAGATGGCGAAATGGGCAAAGGATATAATCATCAAGCAAGA
TAGAAAATAGAACCAAAATTAAACTCGCATCACATCATCTCAGTAACAGGCATTCCAAGAAGAGAGATACTGCAACTCCATTTAAGTTTCAACCTCAGAC
AGATCTAAATGATATTCAATTCGAGTAACCAACAGCTCGATTCATGATAGGTAGGCGGGTAAAGCTAAGCAAAGCGATGCAACCGATTACGCCTTCTGGT
TGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCCGCGCCGCAGTCGGCGTTGGGGCACTCCTTGCG
GAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCGCTGC
TGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCTTCCCCGTCAGGG
TCTTCACGAAGATCTGCATC