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Detailed information on CNT30582668


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG87|RS272_HORVU, E-value = 3e-68

BLAST vs NONCODE:
NONSTUT000620, E-value = 9e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316655Echinochloa crusgalliCorylus avellana37.5969.2194.04218forward
CNT30628786Echinochloa crusgalliVigna unguiculata38.4545.5193.72223forward
CNT30285265Echinochloa crusgalliTriticum aestivum46.2135.6496.27268forward
CNT30220676Echinochloa crusgalliHordeum vulgare49.4850.9895.47287forward
CNT30241998Echinochloa crusgalliAvena sativa44.8332.8397.31260forward
CNT30656101Echinochloa crusgalliTriticum dicoccoides46.2135.9796.27268forward
CNT30130551Echinochloa crusgalliLolium perenne46.0339.2197.38267forward
CNT30341903Echinochloa crusgalliEragrostis tef49.483496.52287forward
CNT30368046Echinochloa crusgalliSorghum bicolor49.6647.2198.26288forward
CNT30369422Echinochloa crusgalliOryza glumipatula39.3117.4396.49228forward
CNT30576569Echinochloa crusgalliOryza barthii48.2823.1493.93280forward
CNT30499384Echinochloa crusgalliDigitaria exilis88.2882.5897.46512forward
CNT30116662Echinochloa crusgalliOryza nivara41.2110.5896.65239forward
CNT30594254Echinochloa crusgalliEragrostis curvula49.4834.6297.56287forward

Expression of CNT30582668

Peptides detected in this lncRNA

>peptide 1 (38 aa)
TKIKLASHQLSNRRSKKITLLLHLSFNLKTDLNDIQFE*

>peptide 2 (63 aa)
MSRCWSGGMPSLSWILAFTLSMVSEDSTSNVMVFPVRVFTKICILAAVGGRLRAAAAATAAAG*

>peptide 3 (29 aa)
MKVPAPQSALGHSLRRRSTRWRVDSFWML*

Sequence

>CNT30582668
GAACCAAAATTAAACTCGCATCACATCAGCTCAGTAACAGGCGTTCCAAGAAGATAACACTGCTACTCCATTTAAGTTTCAATCTCAAGACAGATCTAAA
TGATATTCAATTCGAGTAACCAACAGCTCGATTCATGATAGGTAGGCGGGTAAAGCTAAGCAAAGCGATGCAGCCAATTACGCCTTCTGGTTGTAGACGT
AGGTGAGACCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCCGCGCCGCAGTCGGCGTTGGGGCACTCCTTGCGGAGGCGGAG
CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGC
GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGA
AGATCTGCATCTTGGCGGCGGTGGGGGGTCGCCTCCGCGCAGCGGCGGCGGCGACTGCGGCGGCTGGGTAGGGTTAGAGC