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Detailed information on CNT30476987


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 6e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372106Arabidopsis halleriArabidopsis thaliana22.5735.6696.08153forward
CNT30563605Arabidopsis halleriActinidia chinensis16.2223.2684.55110forward

Expression of CNT30476987

Peptides detected in this lncRNA

>peptide 1 (41 aa)
RVKGPKPETSPIPRQTDLSHPFTPVTLPHTSVKLRRLGRNT*

>peptide 2 (56 aa)
PCQRSQARDESDSSANGSQPPIYPSDVASHLCKASSAWEEHLNRKRNKIRRLQIAS*

Sequence

>CNT30476987
GCCGTGTCAAAGGTCCCAAGCCAGAGACGAGTCCGATTCCTCGGCAAACGGATCTCAGCCACCCATTTACCCCAGTGACGTTGCCTCACACCTCTGTAAA
GCTTCGTCGGCTTGGGAGGAACACCTGAACCGTAAGCGAAACAAGATCCGGCGACTCCAGATTGCTTCATGAGTAACGGCTTTGGGCTGAGAAGATTCGA
GAAAGTGTTGTTGTGATGCGTCGGAGGTAGAGGATGATGGATCTGAGATTGGATCTGGTGGATTTGAGAAGAAGAGAGGGGAATCGGAAACGCTTTTGAT
AAAAGGTACAAGCGCGTCCATGAGTTCACCACCACTACCACCAAACGAATCTGATGCTTGAAACGTTCTGCTACTACTGTACAAATTCATAGCAGCTGCC
ATTTAAAATAAAATTTGAATCCGAAAAAATTAACCTGAGTCTTGTAAAAAGCAAAGAAACAGGGATTTTTCCGAGAAAATTCAAGAAAATAAAATTAAAA
ATTGGATCTAAAAGGTTTGAAATAAGCAACCTCTGTGTAGATCCGAAAAGAGGGAATCAAAAATTCACCCTCGGTTTACTAAAATCTAAGAAGAAAAAAA
AATAGGTAAAATCAGAAGAAATTTGAAAAAAAGATCTCGTTCTGAAAATACCTGCCTTTCAAATTAAAACAAAAAATT