« Back to Saccharum spontaneum search


Detailed information on CNT30465143


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30356773Saccharum spontaneumLactuca sativa28.0927.4680.6134forward

Expression of CNT30465143

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAQMSARSTTETFGVGTRSAIPLSLPLRLGSTSETALAAPVEEWVVVMVPLMM

>peptide 2 (30 aa)
MYMRTCGQYSIYITSPHYTTFPFPFAGSRL*

>peptide 3 (43 aa)
MNNQIREKKRNKKKELFGVWGLDFALLQIITIIIHQGRAWGKF*

Sequence

>CNT30465143
GCATCTCTGAATAAAGAGGTGCGATGTACATGAGAACCTGCGGCCAATATAGTATATATATTACAAGTCCACATTATACAACGTTTCCATTTCCTTTTGC
CGGAAGTCGATTATAATCCGTCCCTCGACAATGAATAATCAGATAAGGGAGAAAAAAAGAAACAAAAAAAAGGAACTGTTTGGAGTTTGGGGCCTCGATT
TCGCATTATTACAAATTATCACCATCATCATTCATCAGGGAAGAGCCTGGGGAAAATTTTGAAGTCGAGGGTGAGCTACAAATTTTGGAGTACCATGCAA
CGCCTCACTTCCACTTGATGGCGCAGATGTCAGCGAGGTCGACGACGGAGACGTTCGGGGTGGGCACCCGGAGCGCGATCCCGTTGAGCTTACCCTTGAG
GTTGGGGAGCACCAGCGAGACGGCCTTGGCGGCGCCGGTGGAGGAGTGGGTGGTGGTCATGGTGCCCTTGATGATGC