Detailed information on CNT30356773


BLAST search results

BLAST vs Swiss-Prot:
sp|P19866|G3PA_SPIOL, E-value = 2e-62

BLAST vs NONCODE:
NONMTRT001777, E-value = 6e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30465143Lactuca sativaSaccharum spontaneum27.4628.0980.6134forward

Expression of CNT30356773

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVTIKRLNERIERLTPSYLQQCQPNPPPFASNPIRYRTMQSPSPCHLP*

>peptide 2 (51 aa)
MKGSRGSLPVICNNVSQIHHPLRVTPFVIVPCNHLHHVISHNHGQRRVNSR*

>peptide 3 (59 aa)
MSSPITMVNDESTVDDTSLHLKSTDTRGSSHTARIPANSLSAASLNAALTSSAKVFLET*

Sequence

>CNT30356773
CAAAAATGTAGATAACTTGAAAAGAAATGGTAACAATTAAACGATTGAATGAAAGGATCGAGAGGCTCACTCCCAGTTATTTGCAACAATGTCAGCCAAA
TCCACCACCCTTTGCGAGTAACCCCATTCGTTATCGTACCATGCAATCACCTTCACCATGTCATCTCCCATAACCATGGTCAACGACGAGTCAACAGTCG
ATGACACGTCGCTGCATCTAAAGTCAACAGACACCAGAGGCTCGTCGCACACCGCCAGAATACCAGCCAACTCATTGTCAGCAGCCTCCCTGAACGCCGC
GTTGACCTCCTCAGCGAAGGTCTTCTTGGAAACCTGAACCACCAAGTCCACGACGGAGACATTGGGTGTGGGCACACGGAGAGCAATACCGTTGAGCTTC
CCTTTGAGTGACGGCAACACAAGCGCGACGGCCTTTGCTGCTCCGGTGGATGAGTGAGTTGTGGTCATTGTTCCCTTTATGATTCCTG