Detailed information on CNT30465009


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 6e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224421Saccharum spontaneumHordeum vulgare5.1220.3888.6853forward

Expression of CNT30465009

Peptides detected in this lncRNA

>peptide 1 (43 aa)
SPAAQQPHQSGLYSTIAPVQSTFATSSANLTAVWEVWQCITGV*

>peptide 2 (44 aa)
MKSGCPGASKIIQTYSSLSSFLTAISIDIPLSRSDLSLSKSQSA*

>peptide 3 (50 aa)
MSPSFLASKPHLVHSPPRQCLPHQSCTRLEGGGAGAACPLPSHPLAAGAR*

>peptide 4 (96 aa)
TSRSTATSIWTVLHYRACPIDLCHQLCELDRGLGGVAVHNWGVAAADLPELVTDPHMRLEASSLLGRVEVGVGYHVPTVQILYCNSPGVKSNTIPR*

>peptide 5 (29 aa)
HQPLNSHINLDCTPLSRLSNRPLPPALRT*

>peptide 6 (54 aa)
MLTDLLIMLSPSSPEIGTKGISSGLYPNFLMQVLTPFTTSSYLSLEYLGVVASI*

>peptide 7 (72 aa)
MQCVHILLETDCQNYTNSRDTSLKCTRVDNKNTTISLGGPSNHILDEVRVSRCVQDHPDVFLTLKFSHSNLN*

Sequence

>CNT30465009
TCACCAGCCGCTCAACAGCCACATCAATCTGGACTGTACTCCACTATCGCGCCTGTCCAATCGACCTTTGCCACCAGCTCTGCGAACTTGACCGCGGTCT
GGGAGGTGTGGCAGTGCATAACTGGGGTGTAGCCGCTGCGGATCTGCCCGAGCTGGTCACAGATCCTCACATGCGCCTCGAAGCTAGCAGCCTCCTGGGC
AGGGTAGAGGTTGGAGTTGGATACCACGTACCCACGGTTCAAATCCTTTACTGCAACTCCCCTGGTGTTAAGTCCAACACTATCCCTCGGTAGAGCCATC
TGCACCGACTCGTTGTGCAGCTCCACTGACCTCACTTCTCCCCCGAGATTGGTGGGTGCAAATGTCACCTTCATTCCTGGCTTCAAAACCCCACCTTGTA
CACAGCCCACCGAGACAGTGCCTACCCCACCAATCTTGTACTCGCCTCGAAGGGGGAGGCGCAGGGGCCGCTTGTCCATTGCCATCGCACCCATTGGCAG
CTGGGGCACGTTGACTGCGTCTAGTGCCTCAAGGAGGGTCAGACCCTTGTACCAGCCCATGTTGACTGACCTTTTAATCATGTTATCACCCTCAAGCCCC
GAGATAGGCACAAAGGGGATATCATCTGGCTTGTACCCCAACTTCTTGATGCAGGTGCTCACTCCCTTCACAACCTCCTCATACCTTTCCTTGGAGTACT
TGGGGGTGGTGGCATCCATCTGAATGTTGAAAATTGAAACTTCCGTTATTAAACAAAAGCATGCAGTGTGTACATATACTACTTGAAACAGACTGTCAAA
ATTATACAAATAGTAGAGATACCAGCCTCAAATGCACCAGAGTCGACAACAAGAACACTACAATCAGCCTGGGAGGTCCCAGCAATCATATTCTTGATGA
AGTCAGGGTGTCCAGGTGCGTCCAAGATCATCCAGACGTATTCCTCACTCTCAAGTTTTCTCACAGCAATCTCAATTGACATTCCCCTCTCACGCTCAGA
CTTGAGCTTGTCAAAAAGCCAGTCTGCATGAGCTCT