Detailed information on CNT30224421


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 9e-36

BLAST vs NONCODE:
NONCQUT004692, E-value = 5e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30465009Hordeum vulgareSaccharum spontaneum20.385.1288.6853forward
CNT30625732Hordeum vulgareDaucus carota52.3163.5587.5136forward
CNT30120727Hordeum vulgareCitrus clementina98.0846.3691.37255forward

Expression of CNT30224421

Peptides detected in this lncRNA

>peptide 1 (64 aa)
RACSRVWPSLEIPASKPPVVESMMSTAQSAWEIPASKPPVVESMMSTAQSAWEVPVIMFLMKSR*

>peptide 2 (85 aa)
EGMLAGLAILGDTGLKTTSGGVNDEHSTVSLGDTSLKTTSGGVNDEHSTVSLGGTRNHVLDEVTVTRGINDGAVVLGGLELPQGNI

Sequence

>CNT30224421
GGAGGGCATGCTCGCGGGTCTGGCCATCCTTGGAGATACCGGCCTCAAAACCACCAGTGGTGGAGTCAATGATGAGCACAGCACAGTCAGCCTGGGAGAT
ACCAGCCTCAAAACCACCAGTGGTGGAGTCAATGATGAGCACAGCACAGTCAGCCTGGGAGGTACCCGTAATCATGTTCTTGATGAAGTCACGGTGACCA
GGGGCATCAATGACGGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCAATATCA