« Back to Saccharum spontaneum search


Detailed information on CNT30462156


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30594934Saccharum spontaneumEragrostis curvula12.2633.4884.6278reverse complement

Expression of CNT30462156

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVLITLCSITHLSFFTFGGFLPMGMSMSMSLRMWLRPS*

>peptide 2 (40 aa)
MTLQAEQSESAKPHVCSEAARLKKKQKSVAMCQRRTLSSNA

>peptide 3 (56 aa)
PKALAWRYPLHLLAEKQSISTQTRWISSHIFFSSPLLLSNSICARAQASSMSFSLE*

>peptide 4 (63 aa)
AQSLGVEVPPASASGEAEHLHPDTLDLFPHLLLITLIVVQQHLRKSPGVVDEFFFGMTSLLLV*

Sequence

>CNT30462156
GCCCAAAGCCTTGGCGTGGAGGTACCCCCTGCATCTGCTAGCGGAGAAGCAGAGCATCTCCACCCAGACACGCTGGATCTCTTCCCACATCTTCTTCTCA
TCACCCTTATTGTTGTCCAACAGCATTTGCGCAAGAGCCCAGGCGTCGTCGATGAGTTTTTCTTTGGAATGACCTCCCTTCTTCTTGTTTGATTTTTCTT
TAGAAGGCGGCGACCCCTCTTCCTCTGGAGGAGACACTTTCTTCGGCTCCTCTCTAGGACATGGTTCAGAAGCTTTCTTTGATCTGTTCCGCTTCTGCAT
GGTATTGATTACTCTCTGCAGCATAACCCATTTATCCTTTTTCACATTTGGCGGCTTCCTGCCCATGGGAATGTCCATGTCCATGTCCTTGAGGATGTGG
TTGAGGCCATCGTAGGCATCTATGAAGAGATTCCGCCTGGTGCCAGGCAACAACATCTCAGGATTCACAAACAAGAGATACACCATGTAGTTGGACATCT
CATTGCACTGGATGACTTTACAGGCTGAACAGTCCGAGTCAGCTAAGCCACATGTATGCTCTGAAGCCGCCAGGCTCAAGAAGAAGCAGAAATCCGTGGC
GATGTGCCAGAGGAGGACACTCTCATCAAATGCCCT