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Detailed information on CNT30459233


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT308240Saccharum spontaneumZea mays17.5131.5594100forward
CNT30353543Saccharum spontaneumEragrostis tef58.8440.3485.71336forward
CNT30364590Saccharum spontaneumSorghum bicolor72.6859.8893.98415forward

Expression of CNT30459233

Peptides detected in this lncRNA

>peptide 1 (31 aa)
REHSSRNTFSSPSPDTLLWVLSLAPRITMHR*

>peptide 2 (59 aa)
MLLSCFSFGRSVWQQVKPPLPWQHPPAAAGLQEAPSVPVSSRDSLPPFNKLRSSRACFCC

Sequence

>CNT30459233
AGAGAACACAGTAGCCGCAACACCTTTTCATCACCATCTCCAGATACGCTACTTTGGGTTCTAAGCCTCGCCCCTCGCATTACTATGCACAGGTAAAAAT
TATTCTCATCCCAGACTGTTTTACCACAGTACGCTGTTTCACCTAGACTTGTTTTGGGCACCTTCTTCAAGGATCTCTCAAGTTCTTCAGTTGAGGTTCT
TGTAGATTCTGAAAGAGACAAACACCGCTGCGGCAGCTGCGACAACAGCAAGAGCGGCATAGGTGTCAGCTCTCTCCCAGGTCTCAAACCAGGTGGGCAT
CGGGCAAGTCTTTGTATTCCCCTTCTTGCTGCCAGCACCACCCTCCTTGTCATCCTCCTTCTGAGAGCTCTTGGGGTTCTGCTCAGCTGCGATGCTCTTG
TCCTGTTTTTCCTTTGGCAGGTCAGTTTGGCAGCAAGTGAAGCCACCATTGCCTTGGCAGCATCCACCAGCTGCTGCAGGGTTGCAAGAAGCACCATCTG
TTCCGGTTTCTTCAAGGGATTCTTTGCCACCATTTAACAAGCTCCGAAGCTCGAGAGCTTGCTTCTGCTGC