« Back to Sorghum bicolor search


Detailed information on CNT30364590


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30459233Sorghum bicolorSaccharum spontaneum59.8872.6893.98415forward
CNT30353543Sorghum bicolorEragrostis tef33.6227.9784.98233forward

Expression of CNT30364590

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MLLSCFSFGKSVWQQGCKKHHLFRFLQGILCHHLACSEARELASAAPQINPSAPCKTP*

>peptide 2 (43 aa)
MLRSSRACFCCSSDKPICPLQDTIAHIRTPGQRNTQLSIKHIL*

Sequence

>CNT30364590
AACTTCGATAGCAGTGGACGTTCACACACGATAGCAGTGGACCTTTTCATCACCATCTCCAGAAACGCTACTTTAAGGTTCTAAGTCTCGCATTACTATG
CACAGGTAAATATTATTCTCATCCCAGACTGTTTTACCACAGTATGCTGTTTCACCTAGACTTGTTTTCGGCACCTCTTCAAAGATCTCTCAAGTTCTTC
AGTTGAGGTTCTTGTAGATTCTGAAAGAGACAAACACCGCTGCAGCAGCTGCGACAACAGCAAGAGCAGCATAGGTGTCAGCTCTCTCCCAGGTCTCAAA
CCAGGTGGGCATCGGGCAAGTCTTTGTATTCCCCTTCTTGCTGCCAGCACCACCCTCCTTGTCATTCTCCTCGGAGCTCTTGGGGTTCTGCTCAGCTGCG
ATGCTCTTGTCCTGTTTTTCCTTTGGCAAGTCAGTTTGGCAGCAGGGTTGCAAGAAGCACCATCTGTTCCGATTTCTTCAAGGGATTCTTTGCCACCATT
TAGCATGCTCCGAAGCTCGAGAGCTTGCTTCTGCTGCTCCTCAGATAAACCCATCTGCCCCCTGCAAGACACCATAGCACACATAAGAACCCCAGGACAA
AGAAACACCCAACTATCAATCAAACATATATTGTAGGATCACTTGAACATAGCAAATTAGCAATGCAAGCAGAAAGCATTAATTTGGTGTCCC