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Detailed information on CNT30457129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691443Saccharum spontaneumOryza sativa11.0831.8682.61115forward
CNT30351035Saccharum spontaneumEragrostis tef8.5733.8487.6489reverse complement
CNT30109567Saccharum spontaneumOryza longistaminata9.1523.9985.2695reverse complement

Expression of CNT30457129

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKSWQPSEVGTLLQSEFIFQNVLDLDSFFL*

>peptide 2 (53 aa)
MCVPIFRWRRITSISLERHSRPDYNHPRMLRLSDRYTNSSGCHDLADHNQPNH*

>peptide 3 (57 aa)
MTLGIFGLGPQSTSLTFHSFHMQLNLLFIHVSNSENENTHTLWCSTNSSNVSMISLI*

Sequence

>CNT30457129
ATCAAACCTTGCTCTGAATACCACTTGATAAGAGTATGTGTGTCCCAATCTTTCGGTGGAGAAGGATAACTTCGATTTCACTGGAGAGACATTCACGACC
CGACTACAACCATCCAAGGATGCTGCGCCTTAGCGATCGATACACCAATTCCAGCGGTTGTCACGATCTTGCGGATCACAACCAACCAAACCACTAGGGT
TATTCCTGCAAGCAATCGAAGAACAAGCAAGAACAAGTAGAACAAGCACTCAATTGCAAATATGAGATGAAGTTTCAGATCTAATACACATAAAGGTGGG
GTTCCGGATCGAGTAGAACAGATGGTCTAACCAACACATGTGTCTACCAGGAAGTAGCAGGAGCTAAACTTACATCAAAACAAAAACCCAATCTCTTTGT
GGCGGCTATGGAGGTATATGAGAGGGTAGAGGACGACCTGGACGTGGTGGGGGTCATCCCACAACCCTAGGACACGCCCCTATTGGGCCCCACTTGATAC
ACGGCCCATCGGGCAACAATCAGGTGACGCAGCACCGTGGACAGAAAAGGTCTCGGTATTAAAATGAGGACTGCGGACGTATTTAACAAGATATCGGCAT
GAGTCCAGATCCGTTGGAAAGTAGACTTGATAAGCTTTCCAAAAAGTCCTAGAACGTCCTAATCGGAGTCCGTATGAAGTCGTGGCAACCGTCGGAAGTT
GGGACTCTTCTGCAGTCCGAATTCATCTTCCAAAACGTGTTGGACTTGGACTCTTTCTTTCTTTGAGCCAAAAGTGACGTGGTGGCTTGGTGGATGACAT
TAGGAATATTTGGACTTGGTCCCCAATCAACTTCATTAACCTTCCATTCTTTCCATATGCAATTGAACCTTCTCTTCATCCATGTAAGTAATTCTGAAAA
TGAAAATACACACACTTTATGGTGCAGCACCAATTCATCAAATGTATCAATGATAAGCCTCATATAGAATGGTTGCACCTTTAGTTTAGAAGTGGTTAAT
ATGGTCATATTCGAGCCAATGATGTCCTCATCACTTGG