« Back to Saccharum spontaneum search


Detailed information on CNT30456541


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 2e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30582821Saccharum spontaneumEchinochloa crusgalli74.1166.4991.3621forward

Expression of CNT30456541

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LTQAPFTNTCTPCSRYEYVCLRYTHASMPSLTCRGRSWWRRPRRCC*

>peptide 2 (43 aa)
MVMRPSPKTSLVLVAGLPTNAREVRAMVAAAMSIRSQLLLSDA*

>peptide 3 (31 aa)
MRYPSTAPMSTTWHAQMARMLCAWIRLGLPR*

>peptide 4 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30456541
CTCTGACCCAAGCTCCCTTCACAAATACTTGTACACCCTGCAGTAGATACGAATACGTATGTCTACGGTACACGCACGCAAGCATGCCCTCACTCACTTG
CCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACAGGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAACGCCT
CCGGGTCGTCGGCGAGCCCGAGTGGGTCGAAGCTGCCGCCAGGGTACAGCGGGTCGACCACCTCCCCGAGCGGGCCACCGGCGATGCGGTACCCCTCGAC
GGCGCCCATGAGCACCACCTGGCACGCCCAGATGGCCAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGCCCGCCCTCGCTGAAG
ATCTGTGACCCGGCCTTGAACCACACGGCCTCGCCAAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAACACGCACCCGAGCGCGCCGAGCATGGCCC
AGCGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCCGCGGACAGCCCAGCGGTGTCCCAGCCGTAGTAGCTTGGGGGCTCGCC
GGAGAACGGACCCAGGTACAGGACGCGGTCGGCCCCGTACCAGGGGCTGCCGGACGCCGCTGGCTTGGGCTTGGCAGCAGTCTTGCGCATGGTGATGCGG
CCCTCGCCGAAGACGTCCCTGGTGCTGGTCGCCGGCTTGCCGACGAACGCGCGGGAGGTGAGAGCCATGGTGGCGGCGGCCATGTCGATCAGATCACAGC
TTCTTCTGTCTGATGCTTAGCTCTGTGTTGTGTATGCG