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Detailed information on CNT30582821


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 9e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695953Echinochloa crusgalliOryza sativa64.5669.7191.04603forward
CNT30395272Echinochloa crusgalliTriticum turgidum49.8949.3194.21466forward
CNT30552150Echinochloa crusgalliOryza glaberrima54.2859.5890.93507forward
CNT30456541Echinochloa crusgalliSaccharum spontaneum66.4974.1191.3621forward
CNT3010578Echinochloa crusgalliZea mays5075.5793.36467forward
CNT30684671Echinochloa crusgalliTriticum urartu49.1447.3294.99459forward
CNT30345510Echinochloa crusgalliEragrostis tef49.1454.5894.55459forward
CNT30103295Echinochloa crusgalliOryza rufipogon66.8151.3289.26624forward

Expression of CNT30582821

Peptides detected in this lncRNA

>peptide 1 (38 aa)
WKGKKKRRAGLDGIQYNQTMNTANPSPLNPRNLHHGTN*

>peptide 2 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

>peptide 3 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 4 (31 aa)
VERKEKKTSWVGRDTIQSDNEHCKSFSVEPS*

>peptide 5 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30582821
GTGGAAAGGAAAGAAAAAAAGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTA
CACCATGGTACAAACTGAAACCAGTGCGCGCTCACATCCGAACACCCTACAGCACGTCAGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGC
ACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGT
CGTCGGCCAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCC
CATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGG
GAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGG
AGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCCGTAGTAGCTCGGGGGCTCGCCGGAGAG
CGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTCTTGCGCATGGTCACGCGGGCCTCG
CCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCGGCGAACGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCATTGCGCTGCAAACACCGAGGTGTC
TTGTGCTCTATGCAGGGGTGAGTGAGACTCGCAG