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Detailed information on CNT30456328


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3014289Saccharum spontaneumZea mays33.2238.886.08194forward

Expression of CNT30456328

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPPKRRRRRRETTGRLLRPASIRLVPTDC*

>peptide 2 (95 aa)
MEFGADGTRLPQPRGDAAEAPPPPPGDHGEIASPRFDSSRAHRLLRELGRNVTEDLVVLMPNLLSFLKHDDPVVVKQSIASGTNLFAAVLEKMTL*

>peptide 3 (56 aa)
LALLASYTTSPERLAAPCPAPPAARRLPRGLRPPPNTKPIPTQSLLLTAHSRGLVP*

>peptide 4 (30 aa)
WPSSPPTPRRLSAWPRPALLLPPRAACLAA*

Sequence

>CNT30456328
CCTGGCCCTCCTCGCCTCCTACACCACGTCGCCTGAGCGCCTGGCCGCGCCCTGCCCTGCTCCTCCCGCCGCGCGCCGCCTGCCTCGCGGCCTGAGGCCA
CCGCCGAACACAAAGCCTATCCCAACCCAATCGCTGCTACTTACTGCTCACAGTCGTGGTCTCGTGCCCTAGATATCCCTCCGCGTGCCCGCGAGGCCCT
GCACCCCCTGAGCTAGGGTTTAGGCTTCAAGCCCATGGAATTCGGAGCGGACGGCACCCGGTTGCCGCAGCCGCGAGGCGATGCCGCCGAAGCGCCGCCG
CCGCCGCCGGGAGACCACGGGGAGATTGCTTCGCCCCGCTTCGATTCGTCTCGTGCCCACAGATTGCTGAGAGAGCTTGGCAGAAATGTTACAGAAGATT
TGGTTGTGCTGATGCCAAACTTGCTGTCATTTTTGAAGCATGATGATCCTGTGGTTGTTAAGCAATCTATAGCTAGTGGGACAAATTTATTTGCTGCTGT
ATTGGAAAAGATGACACTCTAGGTTAACAAGTGCGGAAAACTTGAAACTTGGCTTGAAGACATGTGGCTTGGATGAAGCAGTTC