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Detailed information on CNT30454148


BLAST search results

BLAST vs Swiss-Prot:
sp|P29060|CHIA_TOBAC, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30150723Saccharum spontaneumBrachypodium distachyon11.3822.6792.16102forward

Expression of CNT30454148

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MLCLASSSASTSYRSAAALPCSRNRSTPSSHASPKGRCTPGLDPPKKAFQR*

>peptide 2 (87 aa)
TQKFKIVFFLDRWSTNYKISITFITNTNFKTFKLFIYLFITLFLLAKCKHTTHHHSDDCILFYRYSSTTILGLMLVGKKLVVDRDSK*

Sequence

>CNT30454148
ACCCAAAAATTTAAAATTGTTTTCTTTTTAGACAGATGGAGTACAAATTACAAGATCTCAATTACGTTCATCACTAACACAAACTTCAAAACTTTTAAAC
TGTTTATTTATTTATTCATCACTTTATTCCTTCTTGCAAAATGCAAACACACTACACACCACCACAGTGATGACTGTATTTTATTTTACAGATATAGTAG
TACTACTATACTTGGGCTTATGCTGGTCGGGAAGAAACTAGTGGTTGACAGGGACAGTAAGTGATGCTGACGCAGCATGCATGTCTGAACTGAGAAATCA
TCAAGCATAGTACTTGACCATGCTCGTGTAGTTGGAGAGCTTGTCAGCGTAGCGGTCCCAGATCATGAACCCTCCGTAGTTGTCTGCCTTCTGCACGGAC
GGCGCGACGTCGTAGTAGACGTTCTTGGGGTGCACCCAGCCGTGCGTCATCTCCGACGCCGTCAACCCCACATAGAACCTGGTGCCAGTACGCCTCGCAG
TCGGCGTCGTCGTAGATCCTGACGTGGACGCGCTCGAAGATCCCCGTGTCCAGCGCCCTCTTCAGGTAGCCCGCCGGCGGGAACCCGCAGCGCGGCGTCG
CCGTCAGGTGCAGCGGCTTCCCGGGCCCGCCGCGGATGTTGTGCTTGGCGAGCTCCAGCGCCAGCACGTCGTACCGGTCCGCCGCCGCGCTGCCGTGCTC
CAGGAACAGGTCGACGCCGTCCAGCCACGCGTCGCCGAAGGGGCGGTGCACGCCCGGCTTGGACCCGCCGAAGAAGGCGTTCCAGAGGTAGTCGAAGAGG
TCCAGCGCCGCTTTTTTGGAGGGGAGAGAGTAGCCGGAGCCGAAGCCACCGATGGAGAGCGACACCGGGACGCCCACGAACTGGCAGTGCTTGATG