« Back to Saccharum spontaneum search


Detailed information on CNT30452876


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FMM3|EXA1_ARATH, E-value = 9e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3013911Saccharum spontaneumZea mays21.9592.5794.12187forward
CNT30340121Saccharum spontaneumEragrostis tef44.7213.1882.94381forward

Expression of CNT30452876

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MYQPWDVLVMLEQHLLSNMEQGFAKNFVSPTVLSVPKDSSY*

>peptide 2 (68 aa)
MAQKYASMYKNHQCADWDAREVPSEKVVAAAAIAFVAAPAAAAVAVVAAAAVAVVAAAAVAAEVAAAA*

>peptide 3 (35 aa)
KTKTHRIIRWHRSMLQCIRIISVLIGMHVRYHLRK*

>peptide 4 (34 aa)
MGCACDAGAASPVQYGTGFCKEFCLSNSPFCAKR*

Sequence

>CNT30452876
CTAAGACCAAGACCCATAGAATCATCAGATGGCACAGAAGTATGCTTCAATGTATAAGAATCATCAGTGTGCTGATTGGGATGCACGTGAGGTACCATCT
GAGAAAGTAGTTGCTGCTGCAGCAATAGCTTTTGTTGCTGCTCCAGCTGCAGCTGCTGTTGCAGTTGTTGCTGCTGCTGCTGTTGCAGTTGTTGCTGCTG
CTGCTGTTGCTGCTGAAGTTGCTGCTGCTGCTTGAGCAATAACATCTTGTCCAACATAGAGAGTTGTGGCTGAGGTGTCAAAGGTGTCTGTGTCTGTGAC
TGTGACTGCAACTGTAGTTGTGACAAAAGATATTGCTGCTGAAGCATATTTAACAGCTGTGGATCTTGAGATATCTCAGCAAGCTTCTCAGGTGCCAAAT
GAGGCAAAGCTGGTCGGTTTTGTGGCATTAAGTTGTGCTGTTGAATACCAATACCAATGTTCTGGGAGTTCTGCAGATCTTGACGCATATTAAGAGCCCC
TTGGGCAAGATCTCCACCATGCATGTTAGGATTAACATTTCTTGCTTCAGGGTAATTGGGCCATAGTGGCAGTCCAGAATTACCAGTAGCAACTTGAGGT
TTCTCCTTTGGTTGCAGCATGGCTAGTAAATCAGCATTCTGAGATTGCAAAGATTGGCGAGATGTATCAGCCATGGGATGTGCTTGTGATGCTGGAGCAG
CATCTCCTGTCCAATATGGAACAGGGTTTTGCAAAGAATTTTGTCTCTCCAACAGTCCTTTCTGTGCCAAAAGATAGTTCATATTGACCCCGCTCTCACC
TCCACGGATAGAAATGTTGCCAAAGCTACTACTGCCAAGTTCATTCATACCT