Detailed information on CNT30340121


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FMM3|EXA1_ARATH, E-value = 9e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30452876Eragrostis tefSaccharum spontaneum13.1844.7282.94381forward

Expression of CNT30340121

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MQRKLLSSRNINSPFARSNKKMKTPKRYYWKDLSSNTLDRTVKIYRALLLSSKPY*

>peptide 2 (47 aa)
MLEQAQSWHHSSKVQNLQRMDHLAGPVIFLTLVVLAWLTSPFQQAQQ*

>peptide 3 (40 aa)
MRIRFRFSIVSAVFLGKVFGRYIIFYSDRRPPKEFLCIVW*

>peptide 4 (83 aa)
MFSVSAMLDLAKTSSASKSCNWLLLFLSPALSMPASDLFAPPKCCSEDVAMPFQGIEGTEAAGTAGLALSIANALCARSCSSA*

>peptide 5 (73 aa)
MHHWHCLCFQFLQCLTWPKLLLPANHATGFSYSFHQHFPCLPVIYLHPQNVALKMLPCHSKELKVLKPLARLA*

>peptide 6 (33 aa)
MGGCNFECRIDASMGIEFCAEFCLSKSAFCAKR*

>peptide 7 (35 aa)
MCLCRVIRPCWSRHRVGITLPRYKISKGWTTWRGR*

Sequence

>CNT30340121
GTATTTTGTAAAATCGGTCAAGCAAAGTAGTTCTAAAATCAAATGATATGGCATGGACCAGGCGCAGAACAATAATAAAATAAAGTCCTTAACGCAAAAC
ATATGCAAAGAAAACTCTTATCATCCAGAAACATAAATTCACCTTTTGCAAGATCAAACAAGAAAATGAAAACTCCAAAAAGATACTACTGGAAAGATCT
TAGTTCAAACACACTAGATAGGACAGTAAAGATTTACAGAGCTCTTTTGTTAAGTTCAAAACCATATTGAGTTCAATCACAACATGCTAATTTAGTTTAA
CTTTCATCACTAATTTAGCTTAAAGGTTTAGAAATCAAGGGGAAAAGAGTAGTAATATCCATAAAATAACACAGAAAGTAACCGACTTAATTCAAAGTCA
TTGCAATACGTACTGCTGCTTATTTTGTTTAGAGTTCTCAGAAGGGCCCCAAAACAAATCATCTTCAGCACTTGACTTGGAACGACTGGGAATGTTGGAG
CTCATTTGGACAGGGGCGACTGTCTTTGATGGAGATGATCCAGATGCTTGCCAAGAAGCATTCCCATGATTTTTTTGGTTCATGGGCAACTTAGAAGGAG
TTGGTAGGGGTGCTTGTTGCTTGACAGAACCCAATCTCCTTTCTTCCTCTCTCTGAATATCTCTCAAAGACAAAGGCTTATGTGTCTTTGCAGAGTCATT
AGACCATGCTGGAGCAGGCACAGAGTTGGCATCACTCTTCCAAGGTACAAAATCTCCAAAGGATGGACCACTTGGCGGGGCCGGTAATATTTCTGACTCT
TGTTGTGCTTGCTTGGCTGACTTCCCCTTTTCAGCAGGCACAGCAATAGCTGATGGTGATGGATCAAAGGACCCAACAGGTGATGGTGCTTTCACAGTAG
AACCTTTAGTTTTTGTTGCCTTCTTTTTGCTCTTCTTGTCCTTAGCTTCAATGAAATCATTATCATCAAGTGCAGGAGCATTAGGCTGAGCAGAAGTTGA
CAGAGGTGGAAAAAATGCATCACTGGCATTGCTTATGTTTTCAGTTTCTGCAATGCTTGACCTGGCCAAAACTTCTTCTGCCAGCAAATCATGCAACTGG
CTTCTCTTATTCCTTTCACCAGCACTTTCCATGCCTGCCAGTGATTTATTTGCACCCCCAAAATGTTGCTCTGAAGATGTTGCCATGCCATTCCAAGGAA
TTGAAGGTACTGAAGCCGCTGGCACGGCTGGCTTAGCACTTTCCATAGCTAATGCCCTCTGTGCTCGCAGTTGTTCCTCAGCTTGAATTTCCAGCAGTGA
TTTAGGTCTGGGACCCTGGGTAGGTTTCCATGCTCGCTGGTTTGCCGCATGAGGATCAGATTCAGATTCAGCATTGTTAGTGCTGTATTCCTCGGAAAGG
TTTTTGGGAGGTACATCATTTTCTACTCTGACAGGCGACCCCCAAAAGAGTTCCTCTGTATCGTCTGGTAAATCATGTTTCGTTCCACCAATATCTGAAT
TACCAACCACAGTTTCCTGCCTTGACTGTTGGGCAGAAACTGTCTTGGACACTCCTTTTCCAGCATCTGCAGCAGCCTGTTTCTTCTTTTGCTTCTTTTT
CTTTTCTGATTTCTTTGTCTCCTGTGTATCAGCAACTTTTACTTCATCAGGAGCATCTTCTGAAGACAGTTTGATTTCCTGGACCTGTTTAGAAATATCA
GATAATGCGTTATCTGATCTTTGAGCCACTGGTGGGTGAGGAAAATCCTTAGAAGCTTCCCCAGGGACCCCAATTGTTCCAGAATATATCTTTTCAGAAG
TTTCAGCTTTCATATTTCCAGTGTACACTTCACTAGATTTAACCTCCTGCTGATTAACAGACTGCTCATAATTATTTAACGCCGGGTTTACCATAGTTGA
TTTCGATTGTGGCTCAACATTTGCAAAAACTTCTGGCATCTGAAGACGAGAAAGGCCTTCTTTAGAAACTGAACTCACAATTTCATGGGGCAAAGGCAGG
GTAGCTGAAGAGATTTGGGAAAAAACTATGCCATCCTTATCTCCCATGTTCATAATTGACTGACTAGATTGTTGGCCCACCTGCATACCCTCTTGCATTC
TTCGAAGACCAAGATTCAACGAATCTCCAGACGCCACAGAAGGATGCCTTGGTCCATAAGAGTCATCAGGCTGCTGACTGGTATGTCCCTGAGGTACCAT
GTGAGAAAGTAGGTGCTGCTGCTGTAACAATGCCTTCTGTTGCTGCTCTAGCTGAAGCTGCAGTTGGAGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTTG
AGCAGTAACATCTTGTCCAAAACCGAGAGTTGAGACTGAGGCTGAGGTGTCAAAGGTGGCTGTGATTGCATCTGTAGTTGTGACATCAGATACTGTTGCT
GAAGCACATTTAAGAGTTGTGGATCTTGAGATATCTCAGCAAGCAGCTTCTCAGGTGGCACAGCCAATGAAGGTCGATTTTGTGGCATGAAGCTGTGCTG
TTGGGCACCAATACCAACATTCTGAGAGTTCTGCAGATCTTGGCGCGCATTAAGTGTCCCTTGGTTGAGGTCTACACCACGCATGTTAGGATTAAGGTTT
CTTGCTTCAGGATAGTTGGACCATAGTGGTAACCCAGAGTTACCAGAATGTAGTTGAGGCTTCTCCTTAGAATGCAGCATGGCAAGCAAATCAACATTCT
GAGATTGCAACGATTGGCGGGATGGATCAGCCATGGGTGGCTGCAATTTTGAATGTAGGATAGATGCTTCTATGGGAATAGAGTTTTGCGCAGAATTTTG
TCTTTCCAAAAGTGCTTTCTGTGCCAAAAGGTAATTCATGTTGTTCCCACTATCACCTCCGCCCAAAGCAATGTTGCCAAAGGTACCGCT