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Detailed information on CNT30451175


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FIA1|GDL87_ARATH, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3012457Saccharum spontaneumZea mays37.934.0291.57166forward

Expression of CNT30451175

Peptides detected in this lncRNA

>peptide 1 (71 aa)
RVLVAVAAHRGVGQARRELVQAVQARASRPVGRQPRRGDAAQQPHVDDGELPRPHRVQILQWRHPLEIRLV*

>peptide 2 (36 aa)
MDLESRRLVVREPSFEIICDLVDLKYCTCFDNGMLLP

>peptide 3 (46 aa)
TRAGRGCCTPWRWAGPTRARSGRPSTRQSPRRTTAAPRGRSPAAPR*

>peptide 4 (68 aa)
NACWSRLLHTVALGRPDASSFRPSKHAPVAPSDDSRAAGTQPSSPTLMMANFLAPIACRSCSGGIHWK*

Sequence

>CNT30451175
AACGCGTGCTGGTCGCGGTTGCTGCACACCGTGGCGTTGGGCAGGCCCGACGCGAGCTCGTTCAGGCCGTCCAAGCACGCGCCAGTCGCCCCGTCGGACG
ACAGCCGCGCCGCGGGGACGCAGCCCAGCAGCCCCACGTTGATGATGGCGAACTTCCTCGCCCCCATCGCGTGCAGATCCTGCAGTGGAGGCATCCATTG
GAAATAAGGCTCGTGTAGAGCGTGGCGACGTCGCGCTGCTGGTCGGCTGCTGACTTGTTCTGCGACGCCGACGCCTGCGCGGTTGCGAAGACGAACAGGT
CGTTGCTGCCGACGCTGAAGAGGTAGATGGACTTGGAGAGCAGGAGGTTGGTCGTACGGGAGCCTAGCTTCGAAATCATCTGTGACTTGGTGGACTTGAA
GTACTGCACCTGCTTTGACAATGGGATGTTGTTGCCTG