Detailed information on CNT30446719


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3017288Saccharum spontaneumZea mays7.0224.3692.4171forward
CNT30579811Saccharum spontaneumEchinochloa crusgalli4.6831.9389.47114forward

Expression of CNT30446719

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLLVDWDDRRRRRASEAWLDCWISLLHRASR*

>peptide 2 (34 aa)
MPTRVVFESDAWFDRATVNVALLYVCSKHVVLFL*

>peptide 3 (34 aa)
MKSSSRLDLSINFFFSPCLPVWFSNRMLGSIEQR*

>peptide 4 (41 aa)
MMCEGQLLGIHFWYEIAMGFQAFFLGHWTGITALLKLTCRS*

>peptide 5 (38 aa)
RTASWPPSDSANRTINTLDSSANPSLVCLPSPVYPGLV*

>peptide 6 (54 aa)
MAGHHNKDVVSCAGWEIAQGVVFHPWVLPALCVPVPCFMLLASSYASSSRRAAN*

>peptide 7 (54 aa)
MNQSSSLDGSPYSGGLLFQCSCRIVNFCGGWSDCMQIWRLHYMEQKLWWLYEGA*

>peptide 8 (52 aa)
MVLPIQGVYCFSVLVGLLISAEVGAIVCKFGGFTTWNRNFGGCTKARRKWLV*

>peptide 9 (49 aa)
MLSWDVPARSGSRCCWWTGTTGGVEGLLKRGWIAGSLFCTAPLDDLSLY*

>peptide 10 (78 aa)
MMGALAWQATIIKMLFRVLGGRSHRELFFIPGFSPPFVSLCPASCCWPRLTHHHHGVLQIEWSYSATPSCMKTYCCAI*

Sequence

>CNT30446719
CGAACCGCCTCATGGCCACCGTCGGATTCCGCTAACCGGACAATAAATACATTGGATTCCTCTGCTAACCCTAGCCTTGTTTGCCTACCCTCCCCGGTCT
ACCCTGGCTTGGTCTAGAAGAAAAGTCGCCGCGTTCCCCAAGCCTGATGAAATCCTCTTCTCGTCTAGATCTGAGCATCAACTTCTTCTTTTCCCCATGC
CTACCCGTGTGGTTTTCGAATCGGATGCTTGGTTCGATCGAGCAACGGTGAATGTCGCTCTGTTATATGTTTGTTCGAAACACGTGGTTTTGTTTTTGTG
ATGATGTGCAGGTTCCAATCTGGTTGGTTTGATAGATGGGTTGACGAATCGGCTTGAAGCGAGACGAGGCTGCATAGTTTTCGTGCTTGGAGGCTTCTGA
TCTGCGTGTCTGGCGCGTTTGGTCTGATGTTGAGCTGGGACGTTCCGGCGAGATCTGGATCTCGATGTTGTTGGTGGACTGGGACGACCGGAGGCGTCGA
AGGGCTTCTGAAGCGTGGCTGGATTGCTGGATCTCTCTTCTGCACCGCGCCTCTCGATGATCTCTCTTTGTATTGATAATTATTGGATGAAATTTCGATA
ATTATTAGATCTGAGAGATGTTGGTCGGAGCGATCCGTGCCTAACTGAACTACTGAAGGCAAGGTAAGGTAAACACATGTAACTACTGAGCTGCGTGTGC
CGAGTAAAAAGAGGGGAAAAAAGATACTAGAGAGAAAAAATATGTGAAAAAAGTGAGATGTGACATCTTGAAGGCCTTTGCCATGATGGGTGCGCTCGCA
TGGCAGGCCACCATAATAAAGATGTTGTTTCGTGTGCTGGGTGGGAGATCGCACAGGGAGTTGTTTTTCATCCCTGGGTTCTCCCCGCCCTTTGTGTCCC
TGTGCCCTGCTTCATGTTGTTGGCCTCGTCTTACGCATCATCATCACGGCGTGCTGCAAATTGAATGGAGCTACAGCGCAACACCAAGCTGCATGAAGAC
CTACTGCTGTGCCATATGAAGATCAGCTGCTCAGTCATGGTGGTGATGTAGTTGAAGATCAACATCAACTGCAGTGCCTACATGGTGGCGACGGAGTATT
CATATGATGTGTGAAGGTCAACTGCTCGGTATACATTTTTGGTATGAAATTGCTATGGGCTTCCAAGCTTTCTTTCTCGGTCACTGGACAGGGATAACTG
CTCTGCTCAAGCTCACTTGTAGGTCCTAGTCTCACTAGGAGCTTACTGAACTTGCACGATATTGGTTCATTTCAGTACTCAATGGTTCTGATGCCTTTAT
ATGGGAGTATACTCTTTAGCAGAATATTTCAAAAGTTTTTTTTCCATCTTCTATAGGTGAATTTTTTTAGCTGAACAGTTCTCATTAGAAGTCTTTTTAA
TACTATCTGTTTCAAATTAAAAGATGTTATTAAAAGAGTTTTGAATTTTCATTTGGATAGGCTGTAGATTGTAACATGATAATTCTCCGCGGTAAATGGC
TATGAGCAGGATTGATCATTGTCCGAGGATTGATCATTGTCCGTGGTAAATGGCTATGAGCAGGATTGGTACTGGAGGTTACCTTCCGATTCGGTCGGAG
GTAGCTCTGGCGAGTGGCGACCGATGAATCAGAGTTCCTCTCTCGATGGTTCTCCCTATTCAGGGGGTCTACTGTTTCAGTGTTCTTGTCGGATTGTTAA
TTTCTGCGGAGGTTGGAGCGATTGTATGCAAATTTGGAGGCTTCACTACATGGAACAGAAACTTTGGTGGTTGTACGAAGGCGCGTAGAAAATGGCTTGT
GTAATTTAATTGCGTATTTGACAAAGCATAATTTCGTCTTATTTAAAAAAATAAATTTAAAAATGGTTTTAGATGTTGATCATCAGCGTTCAAATGTAAC
ACGCTTTTAGTCCCGTCTGTCTCCTAATTGTGGATCTTGTCTCAACACGGTGAGGTCCTCTGTGGACTGTTCATTACAGTCCTGGACGGAAGGTGGTTCG
ATTCCACCAAGATCCTGTAGTCCGTATTTTTGTGATCCACAACAGATTTAAATAAATATATACGAAAGAAATTTAGATTTAGATTCTAAGATAATTGTAA
TATATAGTTGATATTATTGTGATTCTGTTTGTATTCTAGTTTTTAATAATCTTATACATCTAAGGTGATTCAAGTCAAGTAGGCTATAAGTTCAAAATTG
CTATATTTCTGCTGCAGGTTATGCACAATTATTCAGCCAATCCTGCTGATTTTAAAATTTTGTGATGCTACTATTATCTATGGAGTTCAGTGTCTGTTAG
AATTTCTGCTTTCTGCTTTCAAAATTTGAAGCCAACGATGCCTCAAACAAAAATTGTTAGTGTTTCTATTATGTTTTCAGTACGTACGAAATTTCTATAT
GATTAGGGTAATTTATGCGTTCTAAAGTAGTCTCT