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Detailed information on CNT3017288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000922, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30446719Zea maysSaccharum spontaneum24.367.0292.4171forward

Expression of CNT3017288

Peptides detected in this lncRNA

>peptide 1 (61 aa)
FAYPAFALDLGEEKSPRSSCLMKSSSRLDLSLRVASGSDAWSDRTTLEARQGCLVFVPGGF*

>peptide 2 (85 aa)
MAGIIIKMLVLCAGWEIARGIVFSSLGSSALCVPMPCFVLFGFSFYASSPVLLQICNIRPMLEITHISTSEYVFEFVMVVGRTGP*

Sequence

>CNT3017288
CTTTTGCCTACCCCGCCTTTGCCTTGGACCTTGGTGAAGAAAAGTCGCCGCGTTCCTCTTGCCTGATGAAATCCTCTTCTCGTCTAGATCTGAGCCTCCG
CGTGGCTTCAGGATCAGATGCTTGGTCCGATCGAACAACGCTCGAAGCGAGACAAGGCTGCCTTGTTTTTGTGCCTGGAGGTTTCTGATCCGTCGAATTG
ATATCTGCCGACCTTCAGAGCTATGACGTTCCGGGGGAATCTGGATCTTGACGGACTGGACAAATGGGAGGCGTCGACGGGCTTCTAAAGCATGGTTGAA
CAATTGTGAGATGTGACATCTTGAAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCATCATAATAAAGATGTTGGTTTTGTGTGCTGGGTGGGAG
ATCGCACGGGGAATTGTTTTTTCATCCCTGGGTTCTTCCGCCCTTTGTGTCCCCATGCCCTGCTTCGTGTTGTTTGGCTTCTCGTTCTACGCTTCATCAC
CGGTGCTGCTGCAAATTTGTAACATCCGGCCAATGTTAGAGATCACACATATCAGTACTAGTGAGTACGTATTTGAATTTGTAATGGTGGTGGGCCGTAC
TGGGCCGTAGTGGGCTATACCCATGACATTAGTATAAGTATGTTGTAAGACTTGAGGAAGGGGTATGGAATGAATAACAGAAACCTTTCCAGAATATTGT
CA