Detailed information on CNT30442767


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41951|TIP21_ARATH, E-value = 8e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521686Aegilops tauschiiSetaria italica55.8263.4590.11283forward
CNT3084527Aegilops tauschiiVigna radiata29.5910.1480.67150forward
CNT30102108Aegilops tauschiiOryza rufipogon47.9340.390.53243forward

Expression of CNT30442767

Peptides detected in this lncRNA

>peptide 1 (38 aa)
NPTNFTTSHFTDKGTCIIQLQLRSEPNNRMFFTSSRHS*

>peptide 2 (49 aa)
MAAGDVGADGDRDEQPKPVANRHGDQPGWVKRRAAAHLGCNFSTFLLARS

>peptide 3 (65 aa)
MLVKSPLATAGPKVTAGFTWPPEMLAPMATATNSPNPWQIATAISPDGSSGAPPLTLAAIFQLFC*

>peptide 4 (78 aa)
TPPTSQHHILQIKEHASSSYSFDLNQTTGCSSHHRDIRETAHHVRTFYVAEGIMDRTTLPMAGLVVVAGDGAVVVAHV*

Sequence

>CNT30442767
AACCCCACCAACTTCACAACATCACATTTTACAGATAAAGGAACATGCATCATCCAGCTACAGCTTCGATCTGAACCAAACAACAGGATGTTCTTCACAT
CATCGAGACATTCGTGAGACTGCCCACCACGTACGCACTTTTTATGTTGCCGAAGGCATTATGGACCGAACGACTCTTCCCATGGCTGGCTTAGTAGTCG
TTGCCGGCGACGGGGCTGTGGTCGTCGCACATGTATAGGTATCGGTAGACGACGCCGGCGAGGCCACCGCCGATGAGCGGGCCGGCCCAGTAGACCCAGA
TGTTGGTGAAGTCGCCGCTGGCAACGGCGGGGCCGAAGGTGACGGCAGGGTTCACATGGCCGCCGGAGATGTTGGCGCCGATGGCGACCGCGACGAACAG
CCCAAACCCGTGGCAAATCGCCACGGCGATCAGCCCGGATGGGTCAAGCGGCGCGCCGCCGCTCACCTTGGCTGCAATTTTTCAACTTTTTTGTTAGCAC
GCAGTCG