Detailed information on CNT30440957


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30158473Aegilops tauschiiPistacia vera5.3927.9810061reverse complement

Expression of CNT30440957

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MEAWSWLSFIHFILCSVVESNHSKDLESFYQPVRTNISLLYSVFSLSASTIWISSPMR*

>peptide 2 (35 aa)
MCANKTTKGLCGTSGTQKSWVIIGLMLRAKPIPRV*

>peptide 3 (81 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDYKRFQLHVPELQRTIRTEAIFPDSLRLTALLPIVIAIVARVWPSP*

>peptide 4 (61 aa)
MNQERQHRFLDLPNGGMVMAFIHSFHSLFCCGIEPLKGFRVLLPTSQNQYFSVIFCFFFVS*

>peptide 5 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 6 (31 aa)
LVFSFLSPQPISIGWTYERIISNLPIAVRIP*

>peptide 7 (31 aa)
MSPEQFQYIWRKTIPHIYRGRNGIGCFHVSP*

Sequence

>CNT30440957
TTTAGTTTTCTCCTTTCTTTCTCCTCAACCTATCTCCATTGGATGGACTTACGAAAGAATAATATCTAATCTCCCCATCGCGGTTAGGATCCCATGAACC
AGGAGCGCCAGCACCGGTTCCTCGATCTTCCTAATGGAGGCATGGTCATGGCTTTCATTCATTCATTTCATTCTTTGTTCTGTTGTGGAATCGAACCACT
CAAAGGATTTAGAGTCCTTTTACCAACCAGTCAGAACCAATATTTCTCTGTTATATTCTGTTTTTTCTTTGTCAGCTAGCACAATTTGGATTTCGAGTCC
AATGCGCTAACGCTTTCTTTAGTTTTCTTGCTTGATTTTTATACGATTTTTTGAGCAACTAGCGTGAAAGCCGTTGCGCATTAGCGCATCCGTTTTCTTG
CTCTTTCTCCGGGCTTTGACCATGTCTCCCGAACAATTTCAGTACATATGGCGCAAGACGATTCCACATATATATCGAGGTCGGAATGGGATCGGGTGTT
TTCACGTCTCACCGTAGTGCCCGGTTTGTCTTGATTGGTGATTGATAAACAAGAAGGAAAATGGAAAAGTAGAAAATCTACATGTTTATACCGTTGAGGT
CCTTAGTTTAGTCAAGTAGGCGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCG
AAGACCCCACCGTGGTATGTGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCTGATGCTTCGG
GCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACAAGCGATTTCAACTTCA
TGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGT
GTGTGGCCCAGCCCATAAGGTCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTT
CTTTGTTTCGGAGCGGGGCGCGTACTATTACC