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Detailed information on CNT3042874


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30707193Prunus dulcisPrunus avium62.1771.9989.62424forward

Expression of CNT3042874

Peptides detected in this lncRNA

>peptide 1 (35 aa)
LLIINIQNKTSSKINTQPLTCFSLFFTYLIISGGQ*

>peptide 2 (72 aa)
MLTRKRRHWRRRPSWRNRRRSAVTAPISWGFCACGACQDRYRAGARRRCRPRAGQVSPCCISCAGRNWISSV*

Sequence

>CNT3042874
CCTCCTTATCATCAACATTCAAAACAAAACATCATCAAAAATAAACACTCAACCCTTGACCTGCTTTAGTTTATTCTTCACCTATTTAATTATTAGTGGG
GGACAATAATATCTACTTAATATATCATCGTTAGGTAAGATTCCATACCACTCTTGTTAAATCACGAATCAATAAGGACACAAACGTCATTTCACAACCA
AACAGATACTACTCCTTCTTATCATATATGTATGTATCTAGACAGAAATCTGACTAGAAAATTGAAATTTGGCCCAACCACATTATTTTAAATTACGAAC
GTGCCCCTTGTCTCACTCCATCCAGTAAGTATCAAGGCAGGCTCCACCATTTGTGGAGACTTGGCCCCACCATACTTTATAGTGAGCCAGGGGTACATCT
GACATTCCAGATGCTTACCAGAAAACGGAGACACTGGAGGCGTAGACCCAGCTGGCGAAATCGGAGGCGATCCGCTGTTACCGCTCCCATATCCTGGGGG
TTTTGTGCTTGCGGAGCTTGCCAAGACCGATATCGGGCCGGGGCCCGGCGACGGTGTCGTCCCAGAGCTGGTCAAGTAAGCCCATGTTGTATATCGTGCG
CCGGCAGAAACTGGATCAGCAGCGTATGATAGCAGAACTGGCGTAACTTAACGATTGCAGTGGGATTGGACTAAGAGGAAGT