Detailed information on CNT30404400


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30717691Beta vulgarisMalus domestica golden6.1122.7482.54126forward

Expression of CNT30404400

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLEVSSLIWSDNIVGGRRTRQNRGIFPYVRRITTIHV*

>peptide 2 (38 aa)
MGPLELIYLPLYYLNILMKFCLGVRFNHNVPSILKRRK*

>peptide 3 (44 aa)
MNKFHYLMVKAYVEYVEIRIFTSHLDEAMLSASLAFFYAHFHDF*

>peptide 4 (48 aa)
MLPLESLKAGKKWGGMIDSTRCLICWVVFALQNRNDKRLTVRCILFCI*

>peptide 5 (59 aa)
EERIRLWCGVVWCPMYSCNVMYVDCSVVLPLLFASLFVSLIICRHKPYVTGSRNAHATT*

>peptide 6 (36 aa)
MDYASCKRDSTSINSLLVLLCRYILSTLLSYLSLNP*

Sequence

>CNT30404400
AAGAAGAAAGAATTAGGTTGTGGTGTGGTGTGGTGTGGTGCCCCATGTATTCATGTAATGTTATGTATGTAGACTGTAGTGTGGTCCTTCCTCTTCTGTT
TGCTTCCCTGTTTGTCTCTCTTATAATATGTAGACACAAACCTTACGTTACAGGTTCAAGGAACGCGCATGCTACCACTTGAATCCCTGAAGGCAGGAAA
AAAGTGGGGAGGTATGATTGATTCAACACGGTGCTTGATTTGTTGGGTTGTCTTCGCACTCCAAAACAGGAATGATAAACGTCTAACAGTTAGATGCATC
TTATTTTGTATATAAGTTTGTATTTGTAAAGCAGCAAATGGAAGAGAGACTTTTATGTAACTTCTCATTGATTTAACTCAGCCAACAATTCGATTTAACA
TACATATAGTCTACTCAAGAATCGAGATAATATATATGTATGGGTATAACTCAAGTACATTAGCGGATCTGCCGAAGGGTCCGCGAACGTCATACCGGAC
GTGACCGAGGAAACGTCATCAACAATGCTTGAGGTCAGTTCATTAATATGGTCCGACAACATTGTTGGTGGTCGTCGAACAAGACAAAATAGAGGAATCT
TCCCTTATGTCAGGCGTATCACAACCATACACGTGTAAATGGATTACGCATCCTGTAAGAGGGATAGTACTTCTATAAATAGTCTATTAGTACTTTTGTG
CAGATACATTCTCTCAACACTACTTTCTTATCTCTCTCTAAATCCTTAACAGGACACATATTGACTTGAGCGTTGGAGGGAGTTCTCGCATCCCCCAAGG
ATAGTTTACATTTGCCTCTTTGCAACTATTCACTAGCGGTCGTCAACTCCACTTCTTGGCGGACTATTCTCAAGACCGCAAATTGTACTATATCCGGAAC
AATATATATAACTCACCACCAATTTTTATGTAAGTTTATAAAGAGTTGCCAGCCGTGGATAAGGGGTTTTGTTTTATTGGAGGGAGGGGGTGATATAGGG
GTAGTTGTCAGTAAAGACAAGAAAATTTCTCGGTAAAAAACATTATTCAAAATTTCTTTTACATTTGAACTCATAGCTGATCATAGAACTAAAATAGATA
TTTTATGTTTTCTACTCACCCGAGCCCATATCCTTGCTTTTCTATCAGTTTCTAATACCAATCTTCCACTCCAATCTGATATTATAGTGCCGGTGTAAAC
CGCAATTGCTTTATGATCCAATCCAGATCGTTAATAAATACCCGAGCTTTACAATATTTGATTGGCATAACACGTCTTTTATAAGATTGACTATAAATTT
CATTACCATTACCACGACCTATTATCGCATATCAGATCACCCCTAAAGTAGCTCTCAGTAATATTAACATTTATAAATGCTTCGCGCATCAATAAGATCA
TGAATAAGTTTCATTATTTGATGGTGAAGGCATATGTGGAATATGTTGAGATTCGCATTTTCACATCGCATTTAGACGAGGCAATGTTATCAGCATCACT
TGCCTTTTTTTATGCTCACTTTCATGACTTTTAAACGACACCTATCAGATTTATGAGAGCCACTTGGTAAGTTGTTGTTAAGATTTGCATGGAGGTGGTG
AGTTAGGTATGTTCTCTTGTGTGTCAAATTCGTAAGATATTTGTTGATCACGATAAAGTGGTGACGCTAACTCCTCTAAAGCTCATTTAAAGGTTGTTGA
AACAGGGCAATTTCTTGCAATCTCTTGAACTAATTTATAGTAGTAGAGAAAATTATACTTCCTCCGTTTCAAAATAGATGATACATTGTCTATTTATGGG
TGTTTCAAAATAGATGATACATTGTTTTTTTTTTCCTTATTTAGTAACTTTTGCCTTACACTTTTACCATTTTACTTAATTAATACATGTGGTCCCCAAC
TTTTTCTTTCTCCCTCCTTTTCACATGGGACCACTAGAATTAATCTACCTCCCTTTATACTACTTAAACATACTTATGAAATTTTGCCTAGGAGTCCGTT
TTAATCACAATGTACCATCTATTTTGAAACGGAGGAAGTAGGAAATTTTAATCATGCACTTG