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Detailed information on CNT30717691


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3C1G7|RPOB_NICSY, E-value = 4e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404400Malus domestica goldenBeta vulgaris22.746.1182.54126forward
CNT30200949Malus domestica goldenPisum sativum15.1638.1883.3384forward
CNT3052251Malus domestica goldenAmborella trichopoda29.062.7485.71161forward

Expression of CNT30717691

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVQFEPVIDNGVLQYLIDYNSVYSIYYRSSQGLH*

Sequence

>CNT30717691
CCTTATTGTAGATAATATCGTTTTTCGTTGACCAACCCTTCCTAATTCACATCTTTATTGAAAGAATTTCTTTGGTAATTCCTTAAATAAGGATTAAAAA
ATTACCGGATCTCCGCCTACACAAGCAAATTGTTGATAAAACTCCAAAATGGCATTCTATGTTGACCCTATTTTTTTTCTCCTTATCATTCAGGAAAGAC
AAGAAAATTGCAGGGTAGCAAACATTCTCTAGAATTTCTCTTAGATTTGAACCCATAGTTGATAAAAGAACAAGAATAGATATTTTTTGTTTCCTACACA
CACGAGCCCATATCCCTACTTTTTTCTATCAATCTCTATTTCTAATCTTCCCTCCCCCCACCCCCCACAGTCTGATATTATGATGCCGGTATAGACAGAA
ATTCCGTTATGGTTCAATTCGAACCAGTAATAGATAACGGGGTTTTGCAATATTTGATTGATTACAATTCTGTATATTCCATTTACTATAGAAGTTCCCA
GGGACTTCATTAGAGGAATGTTTCCAATAAAAATTGTTTGTTCTTGCACATCCC