Detailed information on CNT30404368


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220961Beta vulgarisHordeum vulgare5.9623.7490.3852reverse complement
CNT30683190Beta vulgarisTriticum urartu5.9620.2392.3152reverse complement
CNT30408444Beta vulgarisPapaver somniferum8.3720.2889.0473reverse complement
CNT30604859Beta vulgarisOryza punctata5.9625.1290.3852forward

Expression of CNT30404368

Peptides detected in this lncRNA

>peptide 1 (56 aa)
PHTPVAPSSYYSRGNDSFVNLQVYDTLIRRNTFLPLYMYPFVEGHSIFSWEYDSSC*

>peptide 2 (34 aa)
MAIRGVTPLHYKVNPSLLFNQCGTLTCGVITSSS*

>peptide 3 (30 aa)
MWDTHMWCYHLIVVMPDTQTLASRHFHYPF*

>peptide 4 (39 aa)
MLNMGLGRTHHKERESTSQHKGGSTLKPYGYKGSNPFAL*

>peptide 5 (42 aa)
MKNIFRFLDFLFYLMRLDHPGLKSKSLIIKFIVAPMTQIFWR*

>peptide 6 (34 aa)
MIPHVKYGPGPHPSQGERVHFTTQRRFHLKTIWL*

Sequence

>CNT30404368
GTCCTCACACTCCAGTTGCTCCTAGTAGCTATTATTCGAGGGGCAATGATTCATTTGTGAACTTGCAGGTGTACGACACGCTTATCAGAAGGAACACGTT
TTTACCATTGTACATGTACCCTTTTGTTGAAGGTCATTCTATCTTTTCATGGGAGTATGATTCCTCATGTTAAATATGGGCCTGGGCCGCACCCATCACA
AGGAGAGAGAGTCCACTTCACAACACAAAGGAGGTTCCACCTTAAAACCATATGGCTATAAGGGGAGTAACCCCTTTGCATTATAAAGTGAACCCATCTC
TCTTATTTAATCAATGTGGGACACTCACATGTGGTGTTATCACCTCATCGTCGTAATGCCTGATACTCAAACATTAGCCTCGAGGCATTTTCACTACCCT
TTTTAACCCTGAAATGTCCTTGAACCGATAACGCTCTTTTGGCTAACCTAGCCTCCTCCGTCCCTCAAGGACAATAAGGAGTAGTACATAATATTATTAG
TTATAAATCAACTAAGCCTTTTGACCTGATTAGGACATGAGTCCCCTCCATGGATGAACCGGAAGTTAGATTGTCAGCTTGAGTAACGGAAAATATATAT
ATATATATATATCAATCTAGTATGATAGGGGCTCGCTATCAATTGTAAGAGTTACATTACACTACTGGAGCTATATCCCCCTAGAGATAAGTGGAGCATG
CATGAAGAATATTTTCCGCTTCTTAGATTTTTTATTCTATCTTATGCGGTTGGACCATCCTGGACTTAAATCAAAGAGTTTGATCATAAAATTTATTGTC
GCACCTATGACCCAAATATTTTGGAGATAATAATTAATAGATTCCTTTTCGGTAGATAATCATCCTTCCTAT