Detailed information on CNT30396010


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30323793Triticum turgidumAsparagus officinalis22.6765.5198.07207reverse complement

Expression of CNT30396010

Peptides detected in this lncRNA

>peptide 1 (34 aa)
YLVTTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*

>peptide 2 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 3 (31 aa)
MFPSCGEQSELRQSFRIRSALQPCFPLSLPL*

>peptide 4 (48 aa)
PCYDFTPVEDPTVVCANKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 5 (45 aa)
MPSLPPPPTRHRRNQFQPNLHAHWYFDVTIGRSPWVLGKTTSVHT*

>peptide 6 (44 aa)
MVKFLLKAQLHAGTQSSSSAGMSLGGNFSLGACLSNTKQGFRSL*

>peptide 7 (38 aa)
MFHTIFWPSCRVFLRRQLDIVVTNFNQTSMLTGTLTSL*

Sequence

>CNT30396010
TACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATG
GGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCC
GCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCGGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCC
CATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCC
TCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTACTATTACCACTATGTTCCACACCATTTTCTGGCCTTCATGCCGAGTCTTCC
TCCGCCGCCAACTCGACATCGTCGTAACCAATTTCAACCAAACCTCCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGGTCTTGGGC
AAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACATGCTGGCACTCAATCAA
GTAGTAGCGCTGGCATGTCACTCGGTGGCAATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACAAGGGTTTCGCTCGTTATAGGACTTGACCAAACA
TCTCACGACACGAGGTGACGACAGCCATGCAACACCTGTATGAAAGTCAGTACCATCCTGTTAAGGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTA
AGGTTTTGCGCGT