Detailed information on CNT30390480


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 4e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222490Triticum turgidumHordeum vulgare18.1344.2691.35208forward

Expression of CNT30390480

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MYEIHEDLQQRKSVLNRLILSISCNCNGPCQT*

>peptide 2 (41 aa)
MLWPSRSPSTPTRTTLLCLQLQMDGCVTARRFVRMARCFSGS

>peptide 3 (41 aa)
MIDPCKDCEECVNSFIHGLFEATTIGKRSHDLHPSYMHANN*

>peptide 4 (82 aa)
MDSLKQPPSGRDHMICTHRTCMPIINLLEEVWEVEHVEEEVGPGGTGDTTEEEASGELRPPFSGLQLVGLLLAACERECGRG*

>peptide 5 (60 aa)
MPRGLEHTKPLFITWLAIGGAYAVAISISFNSHTHNSALPAATNGWMCYSKKICQDGKMF*

Sequence

>CNT30390480
GTGGTACGTACTACGTAGTATCATCCATGCAAAGATTATGAGGAATATGTAAATTTATTTATACATAGACTCGTTCAAGCAACCACTGAGAAGAGATCAC
ATCATCTAGGTTATAAGTTAAGTTTCTTATTGGGTTTTGTTTATGCACGCATTATTTAAGAAATTAGCAATTCGCATGTTATAGTATCGTAGTATGATCG
ATCCATGCAAAGATTGTGAGGAATGTGTAAATTCATTTATACATGGACTCTTTGAAGCAACCACCATCGGGAAGAGATCACATGATCTGCACCCATCGTA
CATGCATGCCAATAATTAATCTACTTGAAGAAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTAGGCCCAGGTGGCACCGGAGACACCACCGAAGAAGA
AGCCTCCGGTGAACTGCGACCACCCTTCAGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCTGTGAGCGTGAGTGCGGGCGCGGTTGACGGTGCGCC
CTCGTTGAAGGACGCGACACCGTACATGGTGAGGCAGACGCTAAGGATGGAGACGAGGCCGATGGCGCCGAGAGTGCCTGCCTGGCCGTGAATTGGCGTG
TTGCGGAGCGGGCCGGTGAGCGCGAAGGGGCCGACCAGGAGGTAGCCGTGGGCGAGGCCGACCTCGATGCCGCGGAGGAGCGGGCTGACGGCGGTGCGGT
AGGCGGGGAGGTTTGAGAGGTACCAGGCTGCCGATGAATGGGTCGCCGTTGATGGGCTGGACCACCTGGTACGTCGGCTGTTTGTAGAAGAGACAGGAGA
CACAAGAATATGTATGAGATACACGAAGACTTGCAACAAAGGAAAAGTGTGCTGAATCGCTTAATTTTGTCTATCTCTTGCAATTGCAACGGACCTTGTC
AGACTTGACGGCCTTGACGACGAGGCGGGGCCTCCTGGTGAGCGAAGCGCCGGACATGCCCCGCGGCTTGGAGCACACCAAGCCGCTCTTCATCACCTGG
CTCGCCATCGGAGGAGCATATGCTGTGGCCATCTCGATCTCCTTCAACTCCCACACGCACAACTCTGCTCTGCCTGCAGCTACAAATGGATGGATGTGTT
ACAGCAAGAAGATTTGTCAGGATGGCAAGATGTTTTAGTGGCTCCAA