Detailed information on CNT30222490


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 7e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30292590Hordeum vulgareTriticum aestivum46.3876.4989.91218forward
CNT30390480Hordeum vulgareTriticum turgidum44.2618.1391.35208forward
CNT30555733Hordeum vulgareOryza glaberrima43.8314.4983.5206forward
CNT30438727Hordeum vulgareAegilops tauschii21.2831.6597100forward
CNT30249784Hordeum vulgareAvena sativa29.1516.6996.35137forward
CNT30662078Hordeum vulgareTriticum dicoccoides41.0666.5587.05193forward
CNT30344816Hordeum vulgareEragrostis tef29.1532.2493.43137forward
CNT30597198Hordeum vulgareOryza meridionalis32.1311.2788.74151forward
CNT30582708Hordeum vulgareEchinochloa crusgalli27.4518.8990.7129forward
CNT30556995Hordeum vulgarePanicum hallii29.1519.4993.43137forward

Expression of CNT30222490

Peptides detected in this lncRNA

>peptide 1 (50 aa)
PSAVWSLSASFLRPVRVSTGAVDGSPSVPACPCTGVLRSGPVSAKGPTRR*

>peptide 2 (96 aa)
PFGGLELVGLLLASGEGEHRRGGRLALCAGLSVHGRVAERASEREGADEEVAMGEADLDAAEERADGGAVGGEVTGVSRLPMNGSPLMGWTTWYVG*

>peptide 3 (28 aa)
MNKSLFVLKNNTLNLNFSSLLHAIASLRL

Sequence

>CNT30222490
CCCTTCGGCGGTCTGGAGCTTGTCGGCCTCCTTCTTGCGTCCGGTGAGGGTGAGCACCGGCGCGGTGGACGGCTCGCCCTCTGTGCCGGCCTGTCCGTGC
ACGGGCGTGTTGCGGAGCGGGCCAGTGAGCGCGAAGGGGCCGACGAGGAGGTAGCCATGGGCGAGGCCGACCTCGATGCCGCGGAGGAGCGGGCTGACGG
CGGTGCGGTAGGCGGGGAGGTGACCGGCGTCTCCAGGCTGCCGATGAACGGGTCGCCGTTGATGGGCTGGACCACTTGGTACGTCGGCTGAGAGGAAACA
CCAAAACATGTATGAGATGCAAAGCAAGGCCTACAACAAGCTAAACCCTACTTGTATCCCACAAATTGTGGTTTGTTTTGGATGAATAAATCTCTGTTCG
TCCTAAAAAACAACACGCTAAACCTTAATTTTAGCTCTCTCTTGCATGCAATTGCAAGTTTGCGACTGAC