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Detailed information on CNT30390052


BLAST search results

BLAST vs Swiss-Prot:
sp|A6XMY9|METK1_TRIMO, E-value = 9e-101

BLAST vs NONCODE:
NONPOPT000587, E-value = 6e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116854Triticum turgidumOryza nivara33.711281.36295forward
CNT30594881Triticum turgidumEragrostis curvula8.6920.690.7976forward

Expression of CNT30390052

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MIDSFIPTSQAEALSNLRGFTTSQVKSASSRPKWP*

>peptide 2 (37 aa)
MTKRPDGFKWNMVFSSRYFSGITGLMTCSLRSAAISSL

>peptide 3 (43 aa)
EKVKTAPSIENWEEQGTRITYGFTDAVLKNNWIEETAQVLRFQ*

>peptide 4 (91 aa)
MLKPCFLLKRRNSIIQDTTTSGSSRNDRLLHTHVSSRGLVKLEGLHNLPGEVSILTAKVAISSRLDESVATLLQVKVDADHPSTIRVNEDR*

Sequence

>CNT30390052
CGAAAAGGTTAAGACTGCACCAAGCATCGAGAATTGGGAAGAACAGGGTACTAGGATCACATATGGTTTTACAGATGCAGTACTAAAAAATAACTGGATA
GAGGAAACCGCACAAGTACTGCGGTTTCAGTAGACTCAAAAAGCAAAAACAAAGCACAGAAGACATCAAAAGACCCGACTAGTATTAACTCAGCACATAT
TTCTGTATGCCATACCAAAATACCAATCACTAGACGCCAATTCAGCGTGTCCACGGCGATGTTGAAACCCTGCTTCCTTCTAAAGAGAAGGAATTCAATT
ATCCAAGATACAACCACCAGCGGCAGCAGCAGGAATGATAGACTCCTTCATACCCACGTCTCAAGCAGAGGCCTTGTCAAACTTGAGGGGCTTCACAACC
TCCCAGGTGAAGTCAGCATCCTCACGGCCAAAGTGGCCATAAGCAGCCGTCTTGATGAATCTGTTGCCACCCTTCTTCAAGTCAAGGTTGATGCTGATCA
TCCCAGTACCATAAGAGTCAACGAAGACAGATAAGGGCTCAGGCACACCAATGGCGTAGGAGATCTGAACAATGCAGCGGCGTGCAAGACCGCTAGCAAT
GATGCTCTTGGCAGCCTGCCTGGCAATGTAGGCGCCACTGCGGTCAACCTTAGTTGGGTCCTTGCCGGAGAAAGCACCACCTCCGTGTGCTCCCCAGCCA
CCATAGGTGTCGATGATGATCTTGCGACCAGTAAGACCAGCATCACCATGAGGGCCACCAATGACAAAGCGGCCTGATGGATTCAAGTGGAATATGGTCT
TCTCGTCCAGGTACTTCTCAGGGATCACCGGCTTGATGACATGCTCCTTGAGGTCCGCAGCAATCTCATCATTGG