Detailed information on CNT30387076


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186053Triticum turgidumSecale cereale3.1545.4588.57105forward
CNT30223492Triticum turgidumHordeum vulgare3.0327.386.14101forward

Expression of CNT30387076

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLVLNVSYVMLPSCQPRLIPPIHLPRGPTKRSSPNLVSSVKFKISIK*

>peptide 2 (43 aa)
MSRRRIYGFRAGHAVVVVIPSSILVCVDLLLVRSISWGGVYDM*

>peptide 3 (71 aa)
MHEFKKYYKILKFCSSISNVHELKCKGEKKLKTEKGRKTYTKNINHQPTTVGHTPVVRAEANLRVFMCSKK*

>peptide 4 (65 aa)
MTRGLQPTKLMEVICQVHGLALEHVVSLHNESRSRRVHRQEENTRNFLEVLVEEHHQRQKLKHMY*

>peptide 5 (56 aa)
MFVQVKLKIVELVVSYSTFCILTFHQNSVNKIAKDQTCTSWITSNVLKSFLSVAPQ*

>peptide 6 (30 aa)
MRPSSPGRDTYSLRSELLVSNATSNSERRE*

>peptide 7 (31 aa)
AFVTCIRYNVHLGLPYECAIQKNAQIDNHLK*

>peptide 8 (37 aa)
MSSPSIMNLGPVECIVKKKTQETSWRFWWRNIINDRN*

>peptide 9 (76 aa)
MQRRKKIKNRKRKKNLYKKHKPSTNNSRTHTRSTRRSKPARLYVFKKMKTCASLTLYGDTRLHRAYTKDSLKELLR*

>peptide 10 (80 aa)
MRGRGVLTHFSLGVSRWSLVEPIGRSYYTLKPWNCCYNVHMDRPTKLPLAQLGCPAPLTQLAFFPVRYAPILQKVSHHSV*

Sequence

>CNT30387076
GTGCATTTGTGACTTGTATTCGATATAATGTTCACTTAGGGTTGCCATATGAGTGTGCTATCCAAAAGAATGCCCAAATAGACAATCATCTCAAATGACC
AGAGGATTGCAACCTACGAAATTGATGGAAGTCATATGCCAAGTACATGGGTTGGCTCTAGAGCATGTCGTCTCCCTCCATAATGAATCTAGGTCCCGTA
GAGTGCATCGTCAAGAAGAAAACACAAGAAACTTCCTGGAGGTTTTGGTGGAGGAACATCATCAACGACAGAAATTGAAACATATGTACTAGAAAATACA
AGTGATGATGGGTCTTCATGGCGACCAGGCGGGGAATTTCAATCTGAGTGATACAGATGAGTCGTAGACGCATTTATGGATTTCGTGCAGGTCATGCAGT
GGTGGTTGTGATTCCCAGCTCAATTCTTGTTTGTGTGGATCTTTTGCTTGTAAGATCCATATCTTGGGGAGGTGTGTACGACATGTAGTGACATCGATAT
GACATGTGGCTACTAACACTACAATGCCGACAATGGTGAGGTCCAGGCAACATTAGGAATGGTGGGCGGAATCAAAGCTATTAGAAATTAGCCAAAAAAA
CTCTGGAGGAACTCTCATTTCTAGCATCCACAAGATTAGCTTCAGGCACATGAGTGTGTTTGTGGGCAAGTGCATATTATGTGCCGGTTGGCAATGACAT
AGGTGCACACCAACTACGATCCTTTGAAATGAGCGGTTATGTGTATTTCATTTTCACATTTTTTTTTCACAACCGTGTGCTGAAGCTATTGGTGGGATAA
AGAATCTGATGACATCTAAACATCATATCCTATATAAATGGCACATTCTACACCAGAGCAAACAATGAGAATCTAAACTACCTTGGAATTCATGACAATT
TCACCTTTAATAAACGATCTGAGTTTATTAGTCAAATAACCAAATTAAGTACCAGATAAAAAAACACAAACTCCATGTTCGTACAAGTTAAGTTGAAGAT
CGTTGAGCTTGTCGTCTCTTACTCCACTTTTTGCATCTTGACGTTCCACCAAAACTCCGTGAATAAAATCGCAAAAGACCAAACATGCACAAGTTGGATA
ACCTCAAATGTTTTGAAGAGCTTCCTAAGTGTTGCACCCCAGTAGGTCGGAATTTTTGTTCGTGAACATGTTGTGACCATGGACATACCCCTTGCAAGGA
AGATTGCCAAACCACTGATTTAATGTTATAACCTCAAGGATGAAGTTTCCCGTCATTAAAGAATAAAGCATGAGACACTGATGGCCCAATGAAACTTGAC
ACCCCTAGATCAAGAGTCGGTGACTTGGGGGGCCGAATGAGTACACACACTTGAGGTAGCTGCATGTGTTGTTGACCGCGTGTGTTATGCTGGTGTTAAA
TGTGTCCTACGTGATGCTTCCTTCTTGCCAACCAAGGCTCATACCACCCATACACTTGCCAAGGGGACCTACCAAGCGGTCTAGTCCGAATCTTGTATCC
AGTGTCAAATTTAAGATCTCAATTAAATGAGGGGTCTTCAATTTAGGGAGCTTCGTGAACTTACTAGAGGCCAATGGGCGCTTCGTCGCGTCATTCTTCA
TTCATGAGATTGTCTTTTTCTCTAGCAGGTTATTGTGGTCATTATTGAAGGTATTGTGGTTGCTGTTTCGTTTTGGTTTTATCCCCGTTGGCTTGGATTT
TAATTATGTTTTGATGGTGTGTGTTCTTCGTTCATATATCATGTTGGGGTGCCACTAGAGACGATATTTGTTCTGAGATGAGAGTGTAGTTGTTTGATGC
GTGGTCGTGGTGTCCTTACTCATTTCAGCCTCGGGGTCAGCCGGTGGTCGTTGGTTGAGCCCATTGGGAGGTCCTATTACACGCTGAAACCATGGAATTG
CTGCTATAACGTTCACATGGATCGGCCCACGAAGCTCCCGCTTGCTCAGCTTGGCTGCCCTGCTCCACTCACTCAGTTAGCATTTTTTCCCGTTCGATAT
GCTCCTATCTTACAAAAGGTCAGCCATCATTCTGTTTGAAAAAGTCTGTTAAATCAAAAGATGTTCATTGACCTTTTTAAAACAAAACTTGGATTTCTAA
ACTAACTTCCCTCCTGATGACTACTCTTCTGATCGAGGAGCTCATTCATCTTGCTCTAACAACACATCTTATTTAACAGGACATATGGGCTCTTAGATGA
GTTCTTCTTTCCTTTATCACTTAGGAGCCCTGTCAGTTGAAAGTTTCATGCACGATTTTGCGTGAGAAAAATAAGCGAATAATCCTCCTTTTGACTCTGT
TGCAAATAAAAAAATAAATTTTTTCAACAAATTGCTTGCGAATTTAGAAAACATTCACAAATTTGAAATAAAGTTCAAAAAATTTTAAAATGTTCACAAA
CTTTAAAACTATTGGTGAACTCTACATATATGCATGAATTTAAGAAATATTACAAAATTTTAAAATTTTGTTCAAGTATTTCAAATGTTCATGAATTAAA
ATGCAAAGGAGAAAAAAAATTAAAAACAGAAAAAGGAAGAAAAACTTATACAAAAAACATAAACCATCAACCAACAACAGTAGGACACACACCCGTAGTA
CGCGCAGAAGCAAACCTGCGCGTCTTTATGTGTTCAAAAAAATGAAAACCTGCGCGTCTTTAACGCTCTACGGCGACACTCGACTGCATCGTGCGTACAC
GAAAGATTCGCTGAAAGAGCTTCTTCGGTGAGCGTGTGTGTCAGTTTGTATCAATGCGGCCATCTTCTCCCGGCCGTGATACGTACTCCCTCCGTTCGGA
ATTACTTGTCTCGAATGCGACAAGTAATTCCGAACGGAGGGAGTAGTACGTACAATACGTACTAGATTTGTTCAACTCCGTAGCCGATCTTACAATCCGT
GCATGTACGTATTACTGAAAAGGGCAACCAACAATTAATATGTGCACGAGCTCATTACAGTGGATTCGCCATTGGATGCCACGCATCTTTTGAAGGAACG
AGGTCGATCTCACCCGGCCGACCAAATCTCGGGCATCATACGTGTCTAGTCAAGCGAGCTAGTAGAATGTTTGCCTTTGCATGCCCTGCCACTCGATCAC
ATCACATGCCCACTCCCGTAAAACGTCCCAAGCCATATAAATAAGAGTTTTGCTTTTTGCATATATGGAGAACACGCTCAATTTTCTTCGGGTTCTTTAC
AGGCTACTAAACATACATGGTGTTAGGAAATTAGGAAGCTTTATTTAAGCTTAATCAAGATGAGCACCGATCATAGACATTGCAAATTGACTACGACAAA
CAAGAGACCAGGGACATTTAACATATACTCC