Detailed information on CNT30223492


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387076Hordeum vulgareTriticum turgidum27.33.0386.14101forward
CNT3053197Hordeum vulgareAmborella trichopoda31.357.2691.38116reverse complement
CNT30119778Hordeum vulgareCitrus clementina22.439.696.3983reverse complement

Expression of CNT30223492

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDSVLYIREEGNQKREKTSSSFFYHLGAVRDESLMHGFA*

>peptide 2 (51 aa)
HPKMIISWLLGTNQIRWFYFSTFLTCSYGTKVERIEKVSHSQPLMKDSSKS*

Sequence

>CNT30223492
TCACCCTAAGATGATCATCTCATGGCTATTGGGAACGAATCAAATCAGATGGTTCTATTTCTCAACCTTTCTGACTTGCTCCTACGGAACCAAGGTCGAA
AGGATTGAAAAAGTCAGTCATTCACAACCACTGATGAAGGATTCCTCGAAAAGTTAAGGATTAGTAGTTCTTTTTCGAAATCGATTTCGAAAAAGAATGG
ATTCGGTCTTATACATACGCGAGGAAGGTAATCAAAAAAGAGAGAAGACGAGTTCTTCTTTCTTTTATCACTTAGGAGCCGTGCGAGATGAAAGTCTCAT
GCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGACTCCCCCACTCCAGTCGTC