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Detailed information on CNT30379502


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZG8|MIK2_ARATH, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30572802Manihot esculentaVitis vinifera21.029.4481.51119forward
CNT3026122Manihot esculentaPopulus trichocarpa22.9718.986.15130forward

Expression of CNT30379502

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNEVFSQQTLDLMAAQLYKQLHIRQLQCNS*

>peptide 2 (34 aa)
ATDLIMKLKGTYQELCIQRSQQMRLCWKSPTIKA*

>peptide 3 (59 aa)
SHRFDNETKRHVPGAVYPKVPANEALLEESDNKSIAVPKSDIRGSYSESKRILLLEMSR*

Sequence

>CNT30379502
AGCCACAGATTTGATAATGAAACTAAAAGGCACGTACCAGGAGCTGTGTATCCAAAGGTCCCAGCAAATGAGGCTTTGTTGGAAGAGTCCGACAATAAAA
GCATAGCTGTACCAAAATCAGATATACGAGGTTCGTATTCTGAATCCAAAAGAATATTGTTGCTTGAAATGTCTCGATGAATGATCGGAAAAGGGCAGTT
ATGGTGCATATAAGATAAAGCATTAGCTACACCTTTGACAATATTCTGCCTTTTAATCCAATCCAATTCTGCTGCTTCCTCATCACTGTTTAAAATGCTT
CTCAAGCTACCCTTTTCCACGAACTCGTAAACCAGAAAAGAGTCTTTTGAATGTGAACAAAAACCATGTAGCTTCACAATATTGCGATGCCGAATTTCTA
ACAGCACTTGAATCTCTCTTTCAAAGGCTTTCAAGTTCTTTGACTTGTCAGACTCCTGTAATGAATGAAGTTTTTTCACAGCAAACACTCGACCTGATGG
CAGCACAGCTTTATAAACAACTCCACATCCGCCAACTCCAATGCAATAGTTAGAGTTGAAATTCTC