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Detailed information on CNT30378013


BLAST search results

BLAST vs Swiss-Prot:
sp|Q56WH1|TBA3_ARATH, E-value = 2e-79

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671561Arabidopsis thalianaSetaria viridis64.8372.4384.21247forward

Expression of CNT30378013

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MDTGIWDKIGLELSDIHGSAANVIDGFVIQEDSYIRMFKKGMR*

>peptide 2 (52 aa)
PLCLDGANSSINIFGNNISSVHQTTGHVLSVSRVTLCHHASWLKNGIGDLRD*

>peptide 3 (57 aa)
LFVLMVPTAALTSLGTTSPRYIKQQAMYFPCLGSHFAIMLAGSKTALVISGTDSCSW*

Sequence

>CNT30378013
TCCTCTTTGTCTTGATGGTGCCAACAGCAGCATTAACATCTTTGGGAACAACATCTCCTCGGTACATCAAACAACAGGCCATGTACTTTCCGTGTCTCGG
GTCACACTTTGCCATCATGCTAGCTGGCTCAAAAACGGCATTGGTGATCTCAGGGACTGATAGCTGCTCGTGGTAAGCCTTGGCGGCTGAGATGACTGGT
GCATAAGATGACAGCATGAAATGGATACGGGGATATGGGACAAGATTGGTCTGGAACTCAGTGATATCCACGGATCTGCGGCAAATGTCATAGATGGCTT
CGTTATCCAAGAGGACAGCTACATCCGTATGTTCAAGAAGGGAATGCGTTGAGAGAACACTGTTGTAAGGTTCTACAACAG