Detailed information on CNT30671561


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43473|TBA1_HORVU, E-value = 2e-57

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378013Setaria viridisArabidopsis thaliana72.4364.8384.21247forward
CNT30451548Setaria viridisSaccharum spontaneum78.314.0397.38267forward
CNT30333509Setaria viridisCynara cardunculus65.9840.9186.22225forward

Expression of CNT30671561

Peptides detected in this lncRNA

>peptide 1 (63 aa)
STNWTVLLVLMVATAALTSLGTTSPRYIKQQAMYFPCLGSHLAIMLEGSKTALVISGTESCSW*

>peptide 2 (46 aa)
VHKLDSSLGLDGCNCSIDILGNNITTVHQAASHVLPMPWVTLGHHA*

>peptide 3 (28 aa)
MEQGWPFNVKGPPAYVIDSLVVQEDCNIC

Sequence

>CNT30671561
AGTCCACAAACTGGACAGTTCTCTTGGTCTTGATGGTTGCAACTGCAGCATTGACATCCTTGGGAACAACATCACCACGGTACATCAAGCAGCAAGCCAT
GTACTTCCCATGCCTTGGGTCACACTTGGCCATCATGCTTGAGGGCTCAAAGACAGCATTGGTGATTTCAGGCACAGAGAGCTGCTCATGGTAGGCCTTC
TCGGCAGAGATTACAGGGGCATATGATGAAAGCATGAAATGGATACGTGGGTATGGAACAAGGTTGGCCTTTCAATGTCAAGGGACCTCCGGCATATGTC
ATAGATAGCCTCGTTGTCCAGGAGGACTGCAACATCTGTGT